Os11g0103000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os11g0103000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.4 | 0.513 | 13.9 | 0.325 | 0.485 | -1.21 | -1.94 | 0.983 | -0.573 | 23.1 | 17.33 | 12 | -- | -- |
| 120.55 | 0.511 | 13.9 | 0.368 | 0.444 | -1.19 | -1.03 | -- | -0.57 | 23.7 | 19.99 | 25 | -- | -- |
| 122.6 | 0.52 | 13.9 | 0.34 | 0.507 | -1.22 | -- | -0.563 | -0.546 | 0.198 | 17.33 | 12 | -- | -- |
| 122.04 | 0.515 | 13.9 | 0.353 | 0.57 | -1.32 | -- | -- | -0.613 | 0.761 | 21.49 | 25 | -- | -- |
| 124.95 | 0.521 | 13.9 | 0.359 | -- | -0.883 | -- | -0.521 | -0.556 | -- | 22.3 | 15 | -- | -- |
| 147.99 | 0.57 | 13.9 | 0.355 | 0.774 | -- | 1.02 | -- | -0.542 | 11.4 | -- | -- | -- | -- |
| 152.27 | 0.578 | 13.9 | 0.398 | 0.77 | -- | -- | -- | -0.536 | 11.7 | -- | -- | -- | -- |
| 126.58 | 0.524 | 13.9 | 0.369 | -- | -0.948 | -- | -- | -0.586 | -- | 27.31 | 25 | -- | -- |
| 125.28 | 0.521 | 13.9 | -- | 0.606 | -1.36 | -- | -- | -0.656 | 0.731 | 21.93 | 25 | -- | -- |
| 189.58 | 0.643 | 13.9 | 0.376 | -- | -- | -- | -- | -0.546 | -- | -- | -- | -- | -- |
| 156.44 | 0.585 | 13.9 | -- | 0.766 | -- | -- | -- | -0.581 | 11.6 | -- | -- | -- | -- |
| 130.16 | 0.531 | 13.9 | -- | -- | -0.953 | -- | -- | -0.627 | -- | 27.6 | 25 | -- | -- |
| 193.31 | 0.649 | 13.9 | -- | -- | -- | -- | -- | -0.587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 3 | 114.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 5 | 115.04 | radiation | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 7 | 115.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 14 | 115.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 52 | 116.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 53 | 116.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 64 | 117.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 66 | 117.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 70 | 117.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 73 | 117.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 78 | 117.72 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 153 | 119.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 155 | 119.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 157 | 119.11 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 162 | 119.25 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 165 | 119.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 167 | 119.32 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 168 | 119.33 | radiation | 10 | 90 | < th | dose independent | rect. | 24 | 23 |
| 174 | 119.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 179 | 119.46 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 5 |
| 192 | 119.58 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 193 | 119.59 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 196 | 119.64 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 201 | 119.70 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 208 | 119.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 226 | 119.90 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 230 | 119.92 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 255 | 120.19 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 291 | 120.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 322 | 120.91 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 333 | 121.00 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 338 | 121.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 347 | 121.10 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 19 |
| 356 | 121.17 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 388 | 121.39 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 450 | 121.73 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 14 |
| 491 | 122.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 498 | 122.07 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 516 | 122.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 531 | 122.23 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 538 | 122.28 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 565 | 122.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 578 | 122.44 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 587 | 122.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 588 | 122.50 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 648 | 122.74 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 669 | 122.84 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 670 | 122.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 689 | 122.92 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 716 | 123.05 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 762 | 123.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 791 | 123.23 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 797 | 123.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 830 | 123.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 834 | 123.42 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 835 | 123.43 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 841 | 123.45 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 844 | 123.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 853 | 123.48 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 859 | 123.48 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 864 | 123.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 883 | 123.53 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 903 | 123.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 905 | 123.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 938 | 123.71 | temperature | 10 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 951 | 123.74 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 973 | 123.80 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 981 | 123.82 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |