Os11g0102900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0102900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.69	(0.0466)	R²	:	0.149
β₁	:	0.807	(0.171)	R²_dD	:	0.0434	R²_D	:	0.0487
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.3	(0.589)	R²_dE	:	0.0996	R²_E	:	0.104
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0232	(0.0995)	R²_dN8	:	0.000135	R²_N8	:	0.00123
σ	:	0.871
deviance	:	349.7
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.73
memory length	:	238
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	2.35
open length of G	:	0.433

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
347.68	0.876	3.7	0.915	0.0515	2.73	0.282	13.4	-0.0406	10.4	0.7977	237	2	0.95
353.39	0.876	3.7	0.816	0.0601	3.57	0.232	--	-0.0443	10.2	0.7	247	2.28	0.55
347.92	0.869	3.7	0.923	0.0633	2.71	--	13.4	-0.0396	9	0.8	237	1.99	0.95
353.38	0.876	3.7	0.815	0.0556	3.84	--	--	-0.0677	9.33	0.7098	250	2.28	0.567
348.16	0.869	3.7	0.925	--	2.73	--	13.4	-0.0399	--	0.7989	237	1.99	0.959
388.45	0.924	3.7	0.83	0.184	--	0.316	--	-0.057	6.27	--	--	--	--
388.67	0.923	3.7	0.833	0.187	--	--	--	-0.0584	5.79	--	--	--	--
349.7	0.871	3.69	0.807	--	4.3	--	--	-0.0232	--	0.73	238	2.35	0.433
370.73	0.897	3.73	--	0.0475	3.9	--	--	-0.175	8.49	0.7238	253	2.29	0.562
390.49	0.923	3.7	0.839	--	--	--	--	-0.054	--	--	--	--	--
406.97	0.944	3.72	--	0.201	--	--	--	-0.151	5.6	--	--	--	--
366.66	0.892	3.71	--	--	4.31	--	--	-0.112	--	0.7062	256	2.39	0.377
409.06	0.944	3.72	--	--	--	--	--	-0.147	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	355.00	wind	1	270	< th	dose dependent	rect.	2	1
2	362.45	wind	1	270	< th	dose independent	rect.	2	1
4	364.49	humidity	80	90	> th	dose dependent	rect.	5	23
6	365.99	humidity	70	90	> th	dose dependent	rect.	17	15
10	366.47	humidity	70	90	> th	dose dependent	rect.	15	17
27	367.59	humidity	90	90	< th	dose independent	rect.	24	23
35	367.76	humidity	80	90	> th	dose dependent	rect.	19	14
65	368.34	humidity	90	90	> th	dose independent	rect.	5	23
70	368.41	humidity	90	10	< th	dose dependent	rect.	15	21
127	369.15	humidity	50	90	> th	dose dependent	sin	11	NA
131	369.26	humidity	80	10	< th	dose independent	rect.	15	21
148	369.44	humidity	90	90	< th	dose independent	rect.	14	22
156	369.53	humidity	90	90	> th	dose dependent	rect.	5	19
173	369.80	wind	1	10	< th	dose independent	rect.	8	1
175	369.80	wind	1	10	< th	dose dependent	rect.	8	1
209	370.28	humidity	80	90	> th	dose dependent	rect.	9	23
216	370.36	humidity	80	90	> th	dose dependent	rect.	1	23
219	370.38	humidity	80	90	> th	dose dependent	rect.	19	23
231	370.55	humidity	80	90	> th	dose dependent	no	NA	NA
245	370.72	humidity	90	90	< th	dose dependent	sin	11	NA
277	371.05	humidity	80	10	> th	dose independent	rect.	15	18
299	371.33	humidity	90	90	> th	dose independent	rect.	5	18
325	371.53	temperature	30	270	< th	dose independent	rect.	9	22
329	371.54	humidity	80	30	> th	dose dependent	rect.	23	23
408	372.14	humidity	90	90	> th	dose independent	rect.	1	23
421	372.20	atmosphere	1005	90	< th	dose independent	rect.	4	1
466	372.40	radiation	20	270	> th	dose dependent	rect.	15	18
563	372.93	humidity	90	90	< th	dose independent	rect.	6	16
565	372.94	humidity	90	90	> th	dose independent	rect.	23	23
579	373.03	temperature	30	720	< th	dose independent	rect.	2	13
628	373.21	humidity	90	90	> th	dose independent	rect.	9	23
630	373.22	humidity	90	90	> th	dose independent	no	NA	NA
664	373.30	radiation	20	270	> th	dose independent	rect.	15	18
678	373.36	humidity	90	90	> th	dose dependent	sin	22	NA
693	373.41	radiation	1	30	> th	dose dependent	rect.	15	21
725	373.51	wind	1	90	< th	dose independent	rect.	5	3
778	373.65	temperature	30	720	< th	dose independent	rect.	18	20
792	373.69	wind	3	720	< th	dose independent	rect.	20	1
819	373.77	humidity	70	720	> th	dose dependent	rect.	20	20
827	373.79	wind	1	270	< th	dose independent	rect.	23	20
833	373.80	temperature	30	270	< th	dose independent	rect.	10	11
897	374.00	humidity	90	90	< th	dose independent	rect.	6	23
900	374.01	temperature	30	720	< th	dose independent	rect.	10	5
952	374.11	temperature	30	720	> th	dose independent	rect.	10	1