Os11g0102200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NPH1-1.
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Os11g0102200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NPH1-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.55 | 0.582 | 13 | 0.193 | 1.21 | -2.03 | -0.538 | 0.671 | 0.61 | 23.7 | 91.95 | 36 | -- | -- |
| 153.83 | 0.578 | 13 | 0.179 | 1.25 | -2.04 | -0.722 | -- | 0.635 | 23.6 | 92 | 51 | -- | -- |
| 154.39 | 0.579 | 13 | 0.18 | 1.22 | -2.06 | -- | 0.974 | 0.615 | 23.6 | 93.2 | 43 | -- | -- |
| 156.58 | 0.583 | 13 | 0.188 | 1.25 | -2.04 | -- | -- | 0.624 | 23.5 | 92 | 52 | -- | -- |
| 207.91 | 0.675 | 12.9 | 0.23 | -- | -3.3 | -- | 1.52 | 0.646 | -- | 93.2 | 43 | -- | -- |
| 212.33 | 0.683 | 13 | 0.138 | 2.15 | -- | -0.538 | -- | 0.596 | 1.06 | -- | -- | -- | -- |
| 213.53 | 0.684 | 13 | 0.157 | 2.15 | -- | -- | -- | 0.599 | 1.06 | -- | -- | -- | -- |
| 211.82 | 0.681 | 13 | 0.223 | -- | -3.23 | -- | -- | 0.627 | -- | 92 | 52 | -- | -- |
| 157.59 | 0.585 | 13 | -- | 1.22 | -2.01 | -- | -- | 0.615 | 23.6 | 92 | 52 | -- | -- |
| 499.53 | 1.04 | 12.9 | 0.238 | -- | -- | -- | -- | 0.641 | -- | -- | -- | -- | -- |
| 214.18 | 0.685 | 13 | -- | 2.15 | -- | -- | -- | 0.582 | 1.06 | -- | -- | -- | -- |
| 213.14 | 0.682 | 13 | -- | -- | -3.23 | -- | -- | 0.602 | -- | 92 | 52 | -- | -- |
| 501.03 | 1.04 | 13 | -- | -- | -- | -- | -- | 0.615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.46 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 148.95 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 4 | 150.42 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 8 | 150.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 15 | 151.09 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 22 | 151.33 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 21 |
| 30 | 151.51 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 23 |
| 37 | 151.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 44 | 151.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 47 | 151.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 66 | 152.61 | humidity | 50 | 90 | > th | dose dependent | sin | 23 | NA |
| 78 | 152.86 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 23 |
| 92 | 153.18 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 139 | 153.76 | humidity | 90 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 190 | 154.26 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 220 | 154.51 | humidity | 90 | 90 | < th | dose dependent | sin | 23 | NA |
| 223 | 154.54 | humidity | 90 | 30 | < th | dose dependent | no | NA | NA |
| 231 | 154.63 | humidity | 90 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 243 | 154.70 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 289 | 155.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 384 | 156.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 386 | 156.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 387 | 156.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 388 | 156.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 405 | 156.16 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 519 | 157.31 | humidity | 50 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 526 | 157.39 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 532 | 157.43 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 533 | 157.45 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 599 | 158.23 | humidity | 50 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 637 | 158.59 | humidity | 90 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 639 | 158.62 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 642 | 158.68 | humidity | 50 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 664 | 158.85 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 687 | 158.95 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 688 | 158.95 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 714 | 159.15 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 731 | 159.31 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |