Os11g0101300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0101300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 275.3 | 0.78 | 2.35 | 3.29 | 0.236 | -27.6 | -0.141 | 171 | -0.0601 | 8.05 | 995.7 | 1363 | -- | -- |
| 282.72 | 0.789 | 2.92 | -0.0576 | 0.315 | 2.03 | 0.125 | -- | -0.0729 | 7.19 | 995.7 | 1363 | -- | -- |
| 275.23 | 0.773 | 2.39 | 3.06 | 0.235 | -27.6 | -- | 171 | -0.0596 | 8.03 | 996 | 1285 | -- | -- |
| 277.37 | 0.776 | 2.91 | -0.0645 | 0.274 | 1.49 | -- | -- | -0.0461 | 7.63 | 996.5 | 1847 | -- | -- |
| 276.93 | 0.775 | 2.42 | 2.92 | -- | -30 | -- | 187 | -0.0518 | -- | 996.5 | 936 | -- | -- |
| 290.93 | 0.8 | 2.93 | -0.0261 | 0.281 | -- | -0.0028 | -- | -0.0833 | 7.6 | -- | -- | -- | -- |
| 290.93 | 0.799 | 2.93 | -0.0261 | 0.281 | -- | -- | -- | -0.0833 | 7.6 | -- | -- | -- | -- |
| 281.19 | 0.781 | 2.92 | -0.067 | -- | 1.48 | -- | -- | -0.0447 | -- | 996.5 | 1864 | -- | -- |
| 277.48 | 0.776 | 2.92 | -- | 0.271 | 1.44 | -- | -- | -0.0414 | 7.79 | 996.5 | 1854 | -- | -- |
| 295.16 | 0.803 | 2.93 | -0.0222 | -- | -- | -- | -- | -0.0791 | -- | -- | -- | -- | -- |
| 290.95 | 0.798 | 2.92 | -- | 0.28 | -- | -- | -- | -0.0804 | 7.61 | -- | -- | -- | -- |
| 281.31 | 0.781 | 2.92 | -- | -- | 1.45 | -- | -- | -0.0389 | -- | 996.5 | 1877 | -- | -- |
| 295.17 | 0.802 | 2.93 | -- | -- | -- | -- | -- | -0.0766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 259.53 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 5 | 263.79 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 1 |
| 7 | 264.24 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 3 |
| 8 | 264.24 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 14 | 264.98 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 14 |
| 15 | 264.99 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 4 |
| 30 | 267.06 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 1 |
| 37 | 267.06 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 66 | 267.65 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 73 | 268.00 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 5 |
| 97 | 268.88 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 1 |
| 105 | 269.00 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 6 |
| 123 | 269.38 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 141 | 269.81 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 144 | 269.88 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 145 | 269.88 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 4 | 12 |
| 149 | 269.91 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 2 | 14 |
| 154 | 269.96 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 158 | 270.01 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 22 | 18 |
| 172 | 270.12 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 214 | 270.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 230 | 270.77 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 245 | 270.91 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 259 | 270.97 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 347 | 271.94 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 354 | 272.02 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 380 | 272.21 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 9 | 12 |
| 383 | 272.25 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 385 | 272.26 | atmosphere | 995 | 4320 | > th | dose independent | sin | 5 | NA |
| 429 | 272.70 | wind | 1 | 30 | < th | dose independent | rect. | 14 | 4 |
| 439 | 272.73 | wind | 1 | 30 | < th | dose dependent | rect. | 14 | 4 |
| 443 | 272.75 | wind | 1 | 30 | < th | dose dependent | rect. | 14 | 2 |
| 463 | 272.81 | humidity | 90 | 90 | > th | dose independent | rect. | 14 | 1 |
| 466 | 272.81 | humidity | 90 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 468 | 272.81 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 480 | 272.91 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 485 | 272.98 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 488 | 273.01 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 577 | 273.08 | atmosphere | 995 | 4320 | < th | dose independent | sin | 5 | NA |
| 609 | 273.30 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 617 | 273.39 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 619 | 273.39 | atmosphere | 995 | 30 | < th | dose dependent | rect. | 18 | 23 |
| 622 | 273.41 | atmosphere | 995 | 90 | < th | dose independent | rect. | 18 | 22 |
| 623 | 273.41 | atmosphere | 995 | 30 | < th | dose dependent | sin | 6 | NA |
| 628 | 273.43 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 5 | NA |
| 632 | 273.46 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 639 | 273.49 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 640 | 273.49 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 913 | 273.59 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 16 |