Os10g0580700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os10g0580700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.58 | 0.203 | 11.6 | -0.0465 | 0.252 | -0.253 | 0.0308 | 0.919 | -0.125 | 21.2 | -5.055e-05 | 10 | -- | -- |
| 19.62 | 0.208 | 11.6 | -0.0363 | 0.258 | -0.218 | -0.531 | -- | -0.124 | 22.1 | -2.517 | 49 | -- | -- |
| 18.59 | 0.201 | 11.6 | -0.0493 | 0.252 | -0.252 | -- | 0.9 | -0.125 | 21.2 | -0.0008684 | 9 | -- | -- |
| 20.44 | 0.211 | 11.6 | -0.0226 | 0.24 | -0.311 | -- | -- | -0.112 | 20.8 | -0.0001859 | 56 | -- | -- |
| 21.03 | 0.214 | 11.6 | -0.0489 | -- | -0.449 | -- | 0.864 | -0.129 | -- | -0.07957 | 9 | -- | -- |
| 20.37 | 0.212 | 11.6 | -0.0407 | 0.361 | -- | -0.538 | -- | -0.123 | 22.6 | -- | -- | -- | -- |
| 21.52 | 0.217 | 11.6 | -0.0179 | 0.366 | -- | -- | -- | -0.121 | 22.2 | -- | -- | -- | -- |
| 22.86 | 0.223 | 11.6 | -0.0168 | -- | -0.456 | -- | -- | -0.124 | -- | -0.7421 | 9 | -- | -- |
| 20.44 | 0.211 | 11.6 | -- | 0.242 | -0.306 | -- | -- | -0.109 | 20.7 | -3.528 | 56 | -- | -- |
| 29.68 | 0.255 | 11.6 | -0.0125 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 21.52 | 0.217 | 11.6 | -- | 0.366 | -- | -- | -- | -0.119 | 22.2 | -- | -- | -- | -- |
| 22.87 | 0.223 | 11.6 | -- | -- | -0.456 | -- | -- | -0.122 | -- | -0.7276 | 9 | -- | -- |
| 29.68 | 0.254 | 11.6 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.87 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 10 |
| 3 | 17.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 6 | 17.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 18 | 18.07 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 20 | 18.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 22 | 18.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 23 | 18.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 28 | 18.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 33 | 18.12 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 34 | 18.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 36 | 18.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 41 | 18.15 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 11 |
| 42 | 18.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 74 | 18.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 103 | 18.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 116 | 18.27 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 20 | 16 |
| 120 | 18.28 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 8 |
| 130 | 18.30 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 139 | 18.31 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 143 | 18.31 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 151 | 18.32 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 158 | 18.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 165 | 18.35 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 175 | 18.36 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 22 | 14 |
| 177 | 18.36 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 178 | 18.36 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 180 | 18.36 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 191 | 18.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 204 | 18.37 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 16 |
| 206 | 18.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 208 | 18.38 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 219 | 18.38 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 17 |
| 224 | 18.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 237 | 18.39 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 253 | 18.40 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 16 |
| 330 | 18.44 | atmosphere | 995 | 4320 | > th | dose independent | sin | 8 | NA |
| 331 | 18.44 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 8 |
| 332 | 18.44 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 354 | 18.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 361 | 18.46 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 384 | 18.47 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 522 | 18.51 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 525 | 18.52 | radiation | 40 | 10 | < th | dose independent | sin | 7 | NA |
| 527 | 18.52 | wind | 1 | 30 | > th | dose independent | rect. | 1 | 10 |
| 533 | 18.52 | radiation | 40 | 10 | < th | dose dependent | sin | 5 | NA |
| 560 | 18.53 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 580 | 18.53 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 598 | 18.54 | radiation | 30 | 30 | < th | dose independent | rect. | 23 | 23 |
| 634 | 18.55 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 659 | 18.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 661 | 18.56 | radiation | 40 | 720 | > th | dose independent | rect. | 11 | 1 |
| 683 | 18.57 | temperature | 25 | 30 | > th | dose independent | rect. | 3 | 6 |
| 689 | 18.57 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 691 | 18.57 | radiation | 1 | 10 | > th | dose dependent | sin | 3 | NA |
| 724 | 18.58 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 770 | 18.59 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 15 |
| 830 | 18.60 | radiation | 40 | 720 | > th | dose dependent | sin | 8 | NA |
| 847 | 18.61 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 851 | 18.61 | radiation | 40 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 853 | 18.61 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 7 |
| 856 | 18.61 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 10 |
| 880 | 18.62 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 881 | 18.62 | atmosphere | 995 | 4320 | < th | dose independent | sin | 8 | NA |
| 894 | 18.62 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 896 | 18.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 921 | 18.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 10 |
| 941 | 18.64 | wind | 1 | 30 | > th | dose independent | rect. | 1 | 8 |
| 950 | 18.64 | atmosphere | 995 | 4320 | < th | dose dependent | sin | 11 | NA |
| 958 | 18.64 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 7 |
| 970 | 18.64 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 993 | 18.64 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 999 | 18.65 | radiation | 30 | 10 | < th | dose independent | rect. | 1 | 10 |
| 1000 | 18.65 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 13 |