Os10g0580400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Urea active transporter-like protein.
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Os10g0580400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Urea active transporter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.05 | 0.687 | 11.8 | 4.26 | 0.744 | -0.919 | 1.35 | 3.83 | 0.344 | 22.7 | 20.1 | 742 | 3.82 | 3.15 |
| 248.12 | 0.734 | 11.7 | 4.84 | 1.02 | -0.877 | -1.7 | -- | 0.559 | 23.1 | 20.4 | 1039 | 6.12 | 1.4 |
| 217.14 | 0.686 | 11.7 | 4.41 | 0.745 | -0.891 | -- | 3.18 | 0.39 | 22.7 | 19.9 | 762 | 3.58 | 3.17 |
| 245.65 | 0.73 | 11.6 | 4.8 | 1.06 | -1.21 | -- | -- | 0.535 | 23.3 | 20.39 | 2045 | 6.16 | 1.74 |
| 248.68 | 0.734 | 11.8 | 4.32 | -- | -1.27 | -- | 3.16 | 0.324 | -- | 20.11 | 734 | 3.8 | 3.25 |
| 277.26 | 0.781 | 11.7 | 5.17 | 1.15 | -- | -1.88 | -- | 0.715 | 23.6 | -- | -- | -- | -- |
| 292.14 | 0.8 | 11.7 | 5.25 | 1.16 | -- | -- | -- | 0.725 | 23.3 | -- | -- | -- | -- |
| 294.25 | 0.799 | 11.8 | 5 | -- | -1.58 | -- | -- | 0.395 | -- | 20.2 | 696 | 4.35 | 3.42 |
| 354.98 | 0.878 | 12 | -- | 1.12 | -4.24 | -- | -- | -0.697 | 23.4 | 15.73 | 47520 | 9.07 | 0.903 |
| 376.14 | 0.906 | 11.6 | 5.28 | -- | -- | -- | -- | 0.736 | -- | -- | -- | -- | -- |
| 1018.37 | 1.49 | 11.8 | -- | 1.22 | -- | -- | -- | 0.14 | 23.6 | -- | -- | -- | -- |
| 432.35 | 0.968 | 12 | -- | -- | -4.29 | -- | -- | -0.787 | -- | 19.4 | 47520 | 7.62 | 1.75 |
| 1111.21 | 1.56 | 11.8 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.70 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 3 |
| 5 | 219.93 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 7 | 221.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 9 | 222.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 10 | 222.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 16 | 224.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 18 | 225.07 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 21 | 225.72 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 34 | 228.92 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 50 | 228.92 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 67 | 229.23 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 71 | 229.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 72 | 229.81 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 74 | 229.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 78 | 230.58 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 9 |
| 96 | 231.61 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 98 | 231.62 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 102 | 231.64 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 107 | 231.69 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 108 | 231.69 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 109 | 231.71 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 110 | 231.72 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 111 | 231.75 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 113 | 231.83 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 119 | 232.01 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 120 | 232.12 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 129 | 232.56 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 130 | 232.56 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 136 | 232.60 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 143 | 232.71 | radiation | 30.0 | 30 | < th | dose independent | rect. | 5 | 17 |
| 146 | 232.76 | radiation | 10.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 203 | 233.69 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 204 | 233.69 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 256 | 234.19 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 257 | 234.20 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 8 |
| 259 | 234.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 261 | 234.22 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 264 | 234.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 280 | 234.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 284 | 234.57 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 289 | 234.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 307 | 234.88 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 20 |
| 327 | 235.24 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 353 | 235.33 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 380 | 235.47 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 389 | 235.57 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 426 | 235.92 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 428 | 235.92 | radiation | 30.0 | 90 | < th | dose independent | rect. | 16 | 19 |
| 435 | 235.97 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 439 | 236.04 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 447 | 236.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 492 | 236.45 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 566 | 236.67 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 578 | 236.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 615 | 236.73 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 687 | 237.05 | wind | 5.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 697 | 237.07 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 21 |
| 837 | 237.90 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 845 | 237.95 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 860 | 238.05 | wind | 9.0 | 90 | < th | dose dependent | rect. | 10 | 19 |
| 901 | 238.22 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 904 | 238.24 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 906 | 238.24 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 907 | 238.25 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 956 | 238.37 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 979 | 238.44 | radiation | 30.0 | 10 | < th | dose independent | rect. | 14 | 22 |
| 980 | 238.46 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 982 | 238.49 | radiation | 20.0 | 270 | < th | dose independent | rect. | 14 | 23 |
| 986 | 238.52 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 13 |