Os10g0580100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os10g0580100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.24 | 0.604 | 8.33 | -1.38 | 3.78 | 1.5 | 1.53 | 1.31 | -0.822 | 7.26 | 76.97 | 1324 | -- | -- |
| 166.66 | 0.601 | 8.34 | -1.5 | 3.8 | 1.61 | 1.61 | -- | -0.842 | 7.32 | 77 | 1262 | -- | -- |
| 171.42 | 0.61 | 8.33 | -1.34 | 3.78 | 1.48 | -- | 1.39 | -0.823 | 7.22 | 76.74 | 1337 | -- | -- |
| 173.09 | 0.613 | 8.34 | -1.48 | 3.82 | 1.48 | -- | -- | -0.865 | 7.3 | 75.04 | 1272 | -- | -- |
| 920.16 | 1.41 | 8.42 | -1.33 | -- | 2.09 | -- | 1.16 | -0.771 | -- | 77.44 | 1370 | -- | -- |
| 202.79 | 0.668 | 8.32 | -1.37 | 3.83 | -- | 1.54 | -- | -0.751 | 7.1 | -- | -- | -- | -- |
| 208.99 | 0.677 | 8.32 | -1.34 | 3.84 | -- | -- | -- | -0.755 | 7.08 | -- | -- | -- | -- |
| 922.21 | 1.41 | 8.43 | -1.42 | -- | 2.19 | -- | -- | -0.798 | -- | 77.81 | 1367 | -- | -- |
| 226.49 | 0.701 | 8.29 | -- | 3.83 | 1.49 | -- | -- | -0.678 | 7.05 | 83.38 | 1516 | -- | -- |
| 985.77 | 1.47 | 8.41 | -1.27 | -- | -- | -- | -- | -0.686 | -- | -- | -- | -- | -- |
| 256.51 | 0.749 | 8.29 | -- | 3.82 | -- | -- | -- | -0.605 | 7.11 | -- | -- | -- | -- |
| 973.11 | 1.45 | 8.4 | -- | -- | 1.95 | -- | -- | -0.672 | -- | 83.57 | 1383 | -- | -- |
| 1028.2 | 1.5 | 8.38 | -- | -- | -- | -- | -- | -0.545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.72 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 3 | 157.55 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 4 | 157.65 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 6 | 158.61 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 12 | 159.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 14 | 159.53 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 17 | 159.81 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 28 | 160.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 56 | 162.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 60 | 162.40 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 69 | 163.15 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 72 | 163.36 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 89 | 164.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 111 | 164.71 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 117 | 164.82 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 125 | 165.06 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 22 | 5 |
| 132 | 165.21 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 136 | 165.26 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 149 | 165.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 157 | 165.55 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 175 | 165.72 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 201 | 165.98 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 205 | 166.04 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 207 | 166.04 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 253 | 166.27 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 259 | 166.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 263 | 166.39 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 265 | 166.39 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 273 | 166.46 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 277 | 166.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 15 | 12 |
| 302 | 166.81 | humidity | 80.0 | 90 | > th | dose independent | rect. | 11 | 16 |
| 345 | 167.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 346 | 167.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 351 | 167.44 | humidity | 80.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 354 | 167.45 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 16 |
| 358 | 167.49 | radiation | 1.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 366 | 167.58 | humidity | 80.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 375 | 167.71 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 13 |
| 384 | 167.91 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 14 | 18 |
| 390 | 167.95 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 392 | 167.96 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 401 | 168.00 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 433 | 168.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 435 | 168.30 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 453 | 168.44 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 466 | 168.51 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 472 | 168.56 | humidity | 80.0 | 90 | > th | dose independent | rect. | 15 | 12 |
| 489 | 168.69 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 490 | 168.69 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 502 | 168.80 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 513 | 168.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 520 | 168.92 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 528 | 168.97 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 559 | 169.08 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 574 | 169.13 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 578 | 169.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 589 | 169.19 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 601 | 169.24 | humidity | 60.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 641 | 169.35 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 647 | 169.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 684 | 169.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 686 | 169.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 687 | 169.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 690 | 169.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 691 | 169.43 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 693 | 169.43 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 696 | 169.43 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 697 | 169.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 698 | 169.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 701 | 169.44 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 705 | 169.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 748 | 169.61 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 835 | 169.83 | humidity | 80.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 883 | 169.93 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 895 | 169.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 911 | 170.01 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 915 | 170.02 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 971 | 170.15 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 973 | 170.15 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 974 | 170.15 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 976 | 170.15 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 977 | 170.15 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 978 | 170.15 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 984 | 170.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 990 | 170.15 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 991 | 170.15 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |