Os10g0579800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0579800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : TGF-beta receptor, type I/II extracellular region family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.65 | 0.724 | 7.55 | -2.71 | 4.41 | -3.22 | 1.58 | -4.67 | -0.264 | 11.9 | 0.4988 | 1462 | -- | -- |
| 244.44 | 0.728 | 7.62 | -2.74 | 4.19 | -2.2 | 1.74 | -- | -0.321 | 11.9 | 1.256 | 1529 | -- | -- |
| 239.54 | 0.721 | 7.56 | -2.69 | 3.87 | -3.63 | -- | -5.3 | -0.284 | 11.8 | 0.2273 | 1537 | -- | -- |
| 254.57 | 0.743 | 7.6 | -2.99 | 4 | -2.39 | -- | -- | -0.28 | 11.8 | 1 | 1558 | -- | -- |
| 423.18 | 0.958 | 7.69 | -2.44 | -- | -3.6 | -- | -2.53 | -0.26 | -- | 6.821 | 4 | -- | -- |
| 291.82 | 0.801 | 7.56 | -2.61 | 4.57 | -- | 1.59 | -- | -0.0673 | 11.9 | -- | -- | -- | -- |
| 302.75 | 0.815 | 7.56 | -2.55 | 4.56 | -- | -- | -- | -0.0596 | 11.9 | -- | -- | -- | -- |
| 393.1 | 0.923 | 7.71 | -2.16 | -- | -3.41 | -- | -- | -0.347 | -- | 2.737 | 87 | -- | -- |
| 459.05 | 1 | 7.52 | -- | 3.55 | -0.93 | -- | -- | 0.208 | 12 | 9.95 | 1602 | -- | -- |
| 1612.31 | 1.88 | 7.66 | -2.68 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 473.62 | 1.02 | 7.5 | -- | 4.59 | -- | -- | -- | 0.224 | 11.9 | -- | -- | -- | -- |
| 569.42 | 1.11 | 7.64 | -- | -- | -3.51 | -- | -- | -0.0287 | -- | 3.61 | 81 | -- | -- |
| 1802.43 | 1.98 | 7.59 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 233.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 4 | 234.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 12 | 236.22 | radiation | 1 | 720 | < th | dose dependent | sin | 11 | NA |
| 19 | 237.60 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 21 | 237.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 35 | 238.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 93 | 238.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 178 | 240.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 184 | 240.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 207 | 241.31 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 222 | 241.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 241 | 242.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 246 | 242.36 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 267 | 242.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 272 | 242.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 325 | 243.01 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 332 | 243.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 342 | 243.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 375 | 243.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 404 | 244.04 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 13 |
| 468 | 245.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 473 | 245.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 489 | 245.50 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 497 | 245.58 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 522 | 245.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 551 | 246.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 559 | 246.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 569 | 246.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 571 | 246.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 581 | 246.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 603 | 246.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 612 | 246.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 667 | 246.96 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 674 | 247.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 702 | 247.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 712 | 247.33 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 719 | 247.39 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 745 | 247.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 20 |
| 760 | 247.71 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 765 | 247.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 800 | 247.92 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 816 | 248.08 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 833 | 248.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 838 | 248.25 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 856 | 248.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 921 | 248.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 934 | 248.59 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 939 | 248.63 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 21 |