Os10g0579600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os10g0579600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.22 | 0.323 | 10.1 | 0.755 | 0.747 | 0.582 | -0.0489 | 1.3 | 0.193 | 11.3 | 28.5 | 283 | -- | -- |
| 48.67 | 0.325 | 10.1 | 0.946 | 0.757 | 0.666 | -0.115 | -- | 0.238 | 11.3 | 28.5 | 284 | -- | -- |
| 47.23 | 0.32 | 10.2 | 0.751 | 0.747 | 0.58 | -- | 1.31 | 0.192 | 11.2 | 28.48 | 283 | -- | -- |
| 48.72 | 0.325 | 10.1 | 0.941 | 0.757 | 0.662 | -- | -- | 0.237 | 11.3 | 28.52 | 284 | -- | -- |
| 74 | 0.401 | 10.2 | 0.751 | -- | 0.58 | -- | 1.31 | 0.192 | -- | 28.48 | 911 | -- | -- |
| 61.73 | 0.368 | 10.1 | 0.805 | 0.797 | -- | 0.256 | -- | 0.168 | 9.24 | -- | -- | -- | -- |
| 61.95 | 0.369 | 10.1 | 0.815 | 0.795 | -- | -- | -- | 0.168 | 9.3 | -- | -- | -- | -- |
| 69.8 | 0.389 | 10.1 | 1.05 | -- | 0.89 | -- | -- | 0.297 | -- | 27.42 | 770 | -- | -- |
| 71.14 | 0.393 | 10.2 | -- | 0.732 | 0.52 | -- | -- | 0.113 | 10.7 | 28.7 | 286 | -- | -- |
| 98.79 | 0.464 | 10.2 | 0.811 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 79.44 | 0.417 | 10.2 | -- | 0.795 | -- | -- | -- | 0.0775 | 9.23 | -- | -- | -- | -- |
| 95.76 | 0.456 | 10.2 | -- | -- | 0.799 | -- | -- | 0.126 | -- | 28.8 | 656 | -- | -- |
| 116.13 | 0.503 | 10.2 | -- | -- | -- | -- | -- | 0.0816 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 45.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 13 | 46.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 12 |
| 28 | 46.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 39 | 46.81 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 11 |
| 53 | 47.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 67 | 47.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 72 | 47.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 124 | 47.93 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 133 | 47.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 135 | 47.95 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 140 | 47.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 191 | 48.10 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 18 |
| 206 | 48.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 216 | 48.27 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 263 | 48.45 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 12 |
| 281 | 48.52 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 349 | 48.72 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 386 | 48.86 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 21 |
| 430 | 48.98 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 438 | 49.00 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 468 | 49.11 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 473 | 49.13 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 13 |
| 477 | 49.14 | radiation | 1 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 574 | 49.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 577 | 49.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 578 | 49.45 | radiation | 30 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 585 | 49.47 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 620 | 49.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 625 | 49.61 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 687 | 49.73 | radiation | 30 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 765 | 49.81 | radiation | 1 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 879 | 49.98 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 2 |
| 967 | 50.08 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 975 | 50.09 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |