Os10g0578800 - FiT-DB

Os10g0578800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : LrgB-like protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.4	(0.044)	R²	:	0.805
β₁	:	-2.9	(0.161)	R²_dD	:	0.142	R²_D	:	0.188
β₂	:	2.32	(0.111)	R²_dC	:	0.195	R²_C	:	0.0905
β₃	:	-4.19	(0.122)	R²_dE	:	0.515	R²_E	:	0.447
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.34	(0.0937)	R²_dN8	:	0.00648	R²_N8	:	0.0155
σ	:	0.821
deviance	:	310.84
__

_____

C
peak time of C	:	8.76
E
wheather	:	temperature
threshold	:	14.39
memory length	:	147
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.13
open length of G	:	10.9

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
289.34	0.799	10.5	-3.15	2.17	-4.57	1.81	-3.99	0.245	9.95	11.02	208	7.02	10.9
312.06	0.823	10.5	-2.99	2.16	-4.3	0.989	--	0.236	9.22	12.44	197	7.03	11
297.38	0.803	10.5	-3.07	2.03	-4.39	--	-3.03	0.225	9.37	13.27	205	7.02	11
310.84	0.821	10.4	-2.9	2.32	-4.19	--	--	0.34	8.76	14.39	147	7.13	10.9
323.84	0.838	10.5	-3.06	--	-4.77	--	-3.3	0.393	--	10.76	447	7.4	10.6
446.52	0.991	10.5	-3.43	3.85	--	3.77	--	0.209	4.86	--	--	--	--
483.33	1.03	10.5	-3.44	3.87	--	--	--	0.19	4.87	--	--	--	--
345.17	0.865	10.5	-2.86	--	-4.87	--	--	0.42	--	12.2	440	7.48	10.5
517.37	1.06	10.4	--	2.25	-4.96	--	--	0.665	9.49	16.6	157	7.27	10.7
1273.76	1.67	10.5	-3.3	--	--	--	--	0.29	--	--	--	--	--
795.08	1.32	10.4	--	3.81	--	--	--	0.573	4.9	--	--	--	--
544.96	1.09	10.4	--	--	-5.35	--	--	0.754	--	16.06	454	7.03	11
1560.31	1.84	10.4	--	--	--	--	--	0.655	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	297.77	temperature	10	270	> th	dose dependent	rect.	7	11
7	303.17	temperature	15	90	> th	dose dependent	rect.	1	17
23	310.76	temperature	10	270	> th	dose dependent	rect.	20	22
29	312.11	temperature	25	270	> th	dose dependent	rect.	20	21
59	315.34	temperature	15	90	> th	dose dependent	sin	20	NA
85	316.95	temperature	25	90	> th	dose dependent	rect.	13	23
112	319.35	temperature	15	270	> th	dose dependent	sin	23	NA
129	320.14	radiation	10	270	< th	dose dependent	rect.	3	23
142	320.95	temperature	15	10	> th	dose dependent	rect.	24	19
157	321.42	temperature	15	10	> th	dose dependent	rect.	2	17
160	321.45	radiation	10	270	> th	dose independent	rect.	11	22
162	321.55	temperature	25	90	> th	dose dependent	rect.	7	22
163	321.60	temperature	25	90	> th	dose dependent	rect.	7	18
229	324.01	temperature	30	90	< th	dose independent	rect.	17	23
247	324.45	radiation	10	270	< th	dose dependent	sin	21	NA
252	324.59	temperature	25	90	> th	dose dependent	rect.	2	23
259	324.80	temperature	25	90	> th	dose dependent	no	NA	NA
416	328.59	temperature	25	90	> th	dose dependent	rect.	11	23
434	329.25	radiation	1	270	> th	dose dependent	rect.	13	20
487	331.11	temperature	30	90	< th	dose dependent	rect.	6	17
535	331.75	radiation	10	270	> th	dose independent	sin	20	NA
542	331.86	radiation	30	270	> th	dose dependent	rect.	14	19
545	331.90	humidity	50	90	> th	dose dependent	rect.	18	21
683	333.32	temperature	25	270	> th	dose dependent	rect.	13	2
691	333.38	radiation	40	270	> th	dose independent	rect.	14	19
744	334.51	temperature	30	270	< th	dose independent	rect.	2	23
755	334.66	temperature	30	90	< th	dose dependent	sin	20	NA
765	334.95	temperature	30	270	> th	dose independent	rect.	8	9
808	335.86	temperature	30	270	< th	dose dependent	rect.	7	14
812	336.01	temperature	30	270	< th	dose independent	rect.	3	19
821	336.40	radiation	10	270	< th	dose dependent	rect.	7	15
824	336.45	temperature	30	270	< th	dose dependent	rect.	9	12
886	337.42	temperature	30	270	< th	dose independent	rect.	4	17
930	338.14	temperature	30	270	> th	dose independent	rect.	13	2
942	338.29	temperature	30	10	< th	dose dependent	rect.	6	18
967	338.53	radiation	20	270	> th	dose dependent	sin	13	NA