Os10g0578300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os10g0578300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.52 | 0.462 | 7.94 | 0.417 | 1.54 | -0.107 | 1.14 | -2.85 | -0.0201 | 17.9 | 1.178 | 4312 | -- | -- |
| 103.32 | 0.473 | 8.01 | -0.179 | 1.47 | -0.41 | 0.963 | -- | -0.195 | 17.8 | 35.22 | 4728 | -- | -- |
| 99.62 | 0.465 | 7.94 | 0.41 | 1.54 | -0.0903 | -- | -2.84 | -0.0195 | 17.8 | 1.179 | 4283 | -- | -- |
| 104.75 | 0.477 | 8.01 | -0.106 | 1.56 | -0.421 | -- | -- | -0.198 | 17.8 | 38.95 | 21689 | -- | -- |
| 204.62 | 0.666 | 7.91 | 0.0167 | -- | -0.793 | -- | -2.38 | 0.057 | -- | 1.09 | 10760 | -- | -- |
| 108.03 | 0.487 | 8 | -0.278 | 1.52 | -- | 1.13 | -- | -0.165 | 17.9 | -- | -- | -- | -- |
| 111.17 | 0.494 | 8 | -0.286 | 1.53 | -- | -- | -- | -0.16 | 17.9 | -- | -- | -- | -- |
| 192.78 | 0.647 | 8.12 | 0.165 | -- | -1.15 | -- | -- | -0.202 | -- | 3.72 | 6469 | -- | -- |
| 104.7 | 0.477 | 8.02 | -- | 1.57 | -0.459 | -- | -- | -0.221 | 17.9 | 38.99 | 21507 | -- | -- |
| 232.51 | 0.713 | 7.98 | -0.333 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 113.33 | 0.498 | 7.99 | -- | 1.53 | -- | -- | -- | -0.128 | 17.9 | -- | -- | -- | -- |
| 176.93 | 0.62 | 7.98 | -- | -- | -1.63 | -- | -- | -0.227 | -- | 4.63 | 6446 | -- | -- |
| 235.43 | 0.716 | 7.97 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.48 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 17 |
| 2 | 92.52 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 3 |
| 4 | 92.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 8 | 92.88 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 9 | 92.90 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 37 | 93.21 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 45 | 93.39 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 47 | 93.40 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 56 | 93.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 73 | 93.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 82 | 93.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 87 | 93.75 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 15 |
| 88 | 93.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 92 | 93.78 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 101 | 93.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 121 | 93.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 123 | 93.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 127 | 93.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 130 | 93.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 140 | 94.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 141 | 94.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 238 | 94.93 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 248 | 95.04 | temperature | 25 | 90 | > th | dose independent | sin | 10 | NA |
| 267 | 95.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 269 | 95.23 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 320 | 95.52 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 331 | 95.62 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 339 | 95.66 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 349 | 95.71 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 3 |
| 356 | 95.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 357 | 95.74 | radiation | 10 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 368 | 95.80 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 380 | 95.86 | radiation | 10 | 720 | > th | dose independent | rect. | 8 | 1 |
| 382 | 95.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 392 | 95.91 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 410 | 95.97 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 422 | 96.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 427 | 96.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 445 | 96.12 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 4 |
| 448 | 96.12 | radiation | 10 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 480 | 96.23 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 509 | 96.34 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 535 | 96.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 545 | 96.44 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 578 | 96.55 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 604 | 96.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 614 | 96.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 632 | 96.65 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 635 | 96.65 | temperature | 15 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 645 | 96.68 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 655 | 96.70 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 656 | 96.70 | temperature | 15 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 669 | 96.72 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 22 |
| 689 | 96.76 | radiation | 10 | 720 | < th | dose independent | rect. | 8 | 2 |
| 690 | 96.76 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 712 | 96.79 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 716 | 96.80 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 727 | 96.81 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 733 | 96.81 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 22 |
| 736 | 96.82 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 746 | 96.82 | radiation | 10 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 759 | 96.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 764 | 96.85 | radiation | 40 | 90 | > th | dose independent | rect. | 12 | 22 |
| 774 | 96.86 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 22 |
| 801 | 96.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 21 | 21 |
| 804 | 96.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 806 | 96.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 814 | 96.89 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 818 | 96.89 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 821 | 96.90 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 865 | 96.92 | radiation | 1 | 4320 | < th | dose independent | no | NA | NA |
| 873 | 96.92 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 894 | 96.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 911 | 96.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 931 | 96.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 945 | 96.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 958 | 96.96 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 972 | 96.96 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 978 | 96.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 20 |
| 982 | 96.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 21 |