Os10g0578200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CSLD2 (Fragment).
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Os10g0578200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CSLD2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 403.8 | 0.944 | 4.09 | -0.666 | 0.87 | 1.39 | -1.03 | 0.576 | -0.0211 | 5.64 | 20.4 | 631 | -- | -- |
| 404.31 | 0.936 | 4.11 | -0.751 | 0.891 | 1.31 | -1.12 | -- | -0.0463 | 5.54 | 20.6 | 545 | -- | -- |
| 405.22 | 0.938 | 4.09 | -0.612 | 0.899 | 1.37 | -- | 0.699 | 0.000757 | 5.15 | 20.4 | 547 | -- | -- |
| 406.57 | 0.939 | 4.1 | -0.724 | 0.898 | 1.29 | -- | -- | -0.034 | 5.03 | 20.6 | 515 | -- | -- |
| 439.82 | 0.977 | 4.12 | -0.687 | -- | 1.41 | -- | 0.621 | -0.0636 | -- | 20.5 | 1059 | -- | -- |
| 456.99 | 1 | 4.05 | -0.303 | 0.773 | -- | -0.978 | -- | 0.243 | 5.05 | -- | -- | -- | -- |
| 458.54 | 1 | 4.05 | -0.304 | 0.77 | -- | -- | -- | 0.247 | 4.46 | -- | -- | -- | -- |
| 438.89 | 0.976 | 4.13 | -0.876 | -- | 1.45 | -- | -- | -0.063 | -- | 20.6 | 1194 | -- | -- |
| 419.91 | 0.954 | 4.08 | -- | 0.867 | 1.1 | -- | -- | 0.0847 | 4.91 | 20.6 | 501 | -- | -- |
| 490.31 | 1.03 | 4.05 | -0.274 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 460.98 | 1 | 4.04 | -- | 0.765 | -- | -- | -- | 0.281 | 4.47 | -- | -- | -- | -- |
| 454.93 | 0.993 | 4.09 | -- | -- | 1.05 | -- | -- | 0.0893 | -- | 20.6 | 874 | -- | -- |
| 492.29 | 1.04 | 4.05 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 395.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 3 | 397.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 13 | 399.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 14 |
| 25 | 400.68 | temperature | 20.0 | 720 | > th | dose independent | sin | 12 | NA |
| 39 | 401.72 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 10 |
| 62 | 403.25 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 64 | 403.29 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 67 | 403.61 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 92 | 404.94 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 100 | 405.22 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 21 |
| 105 | 405.32 | temperature | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 112 | 405.59 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 125 | 405.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 141 | 406.17 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 171 | 406.87 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 175 | 406.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 179 | 406.95 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 203 | 407.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 216 | 407.28 | temperature | 20.0 | 720 | < th | dose independent | sin | 14 | NA |
| 232 | 407.44 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 259 | 407.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 274 | 408.16 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 276 | 408.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 278 | 408.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 301 | 408.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 23 |
| 358 | 409.45 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 370 | 409.62 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 372 | 409.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 23 |
| 402 | 409.99 | wind | 9.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 427 | 410.35 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 439 | 410.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 451 | 410.73 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 456 | 410.83 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 474 | 411.10 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 506 | 411.30 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 512 | 411.36 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 19 |
| 542 | 411.69 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 562 | 411.94 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 567 | 412.01 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 569 | 412.03 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 594 | 412.26 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 641 | 412.77 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 668 | 413.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 676 | 413.10 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 690 | 413.25 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 693 | 413.27 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 697 | 413.30 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 745 | 413.65 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 759 | 413.73 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 839 | 414.29 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 884 | 414.44 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 923 | 414.59 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 957 | 414.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 967 | 414.76 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 977 | 414.80 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |