Os10g0577500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 16 domain containing protein.
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Os10g0577500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 16 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.12 | 0.484 | 11 | -0.798 | 2 | -0.808 | -0.344 | 3.05 | -0.556 | 2.97 | 6.311 | 777 | -- | -- |
| 115.81 | 0.501 | 11.1 | -0.781 | 1.97 | -0.812 | 0.656 | -- | -0.541 | 3 | 2.99 | 804 | -- | -- |
| 106.39 | 0.48 | 11 | -0.783 | 1.98 | -0.775 | -- | 2.9 | -0.552 | 2.95 | 6.32 | 784 | -- | -- |
| 113.8 | 0.497 | 11.1 | -0.775 | 1.54 | -0.582 | -- | -- | -0.596 | 2.52 | 19.48 | 1219 | -- | -- |
| 135.81 | 0.543 | 11.1 | -0.484 | -- | 1.43 | -- | 0.963 | -0.478 | -- | 0.9996 | 313 | -- | -- |
| 120.83 | 0.515 | 11.1 | -0.759 | 1.67 | -- | 0.28 | -- | -0.51 | 2 | -- | -- | -- | -- |
| 121.12 | 0.515 | 11.1 | -0.768 | 1.67 | -- | -- | -- | -0.511 | 1.97 | -- | -- | -- | -- |
| 131.37 | 0.534 | 11.1 | -0.648 | -- | 1.36 | -- | -- | -0.523 | -- | 0.99 | 300 | -- | -- |
| 130.57 | 0.532 | 11.1 | -- | 1.5 | -0.507 | -- | -- | -0.556 | 2.16 | 19.5 | 1258 | -- | -- |
| 289.43 | 0.795 | 11 | -0.698 | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
| 136.65 | 0.547 | 11 | -- | 1.66 | -- | -- | -- | -0.426 | 1.95 | -- | -- | -- | -- |
| 142.24 | 0.555 | 11 | -- | -- | 1.37 | -- | -- | -0.386 | -- | 0.5392 | 300 | -- | -- |
| 302.29 | 0.812 | 11 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 9 | 99.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 14 | 100.02 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 18 | 100.27 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 22 | 100.43 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 10 |
| 26 | 100.66 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 8 |
| 75 | 102.31 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |
| 131 | 103.42 | temperature | 20 | 720 | > th | dose independent | sin | 1 | NA |
| 132 | 103.43 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 146 | 103.65 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 164 | 103.89 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 16 |
| 197 | 104.42 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 200 | 104.46 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 227 | 104.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 234 | 104.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 244 | 104.90 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 247 | 104.92 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 264 | 105.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 266 | 105.05 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 15 |
| 292 | 105.27 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 9 |
| 301 | 105.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 304 | 105.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 310 | 105.37 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 368 | 105.67 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 1 |
| 389 | 105.77 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 403 | 105.78 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 19 |
| 412 | 105.83 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 21 |
| 427 | 105.96 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 1 |
| 453 | 106.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 482 | 106.16 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 521 | 106.32 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 527 | 106.35 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 557 | 106.42 | radiation | 10 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 564 | 106.45 | wind | 9 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 569 | 106.48 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 7 |
| 571 | 106.50 | wind | 1 | 720 | > th | dose independent | rect. | 6 | 7 |
| 588 | 106.58 | wind | 1 | 270 | > th | dose independent | rect. | 14 | 14 |
| 596 | 106.59 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 597 | 106.60 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 15 |
| 635 | 106.69 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 648 | 106.73 | radiation | 10 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 669 | 106.83 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 692 | 106.88 | wind | 9 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 697 | 106.90 | wind | 7 | 270 | < th | dose independent | rect. | 4 | 10 |
| 720 | 106.97 | radiation | 10 | 720 | < th | dose dependent | no | NA | NA |
| 734 | 107.00 | wind | 1 | 720 | > th | dose independent | rect. | 6 | 16 |
| 772 | 107.05 | humidity | 50 | 720 | > th | dose dependent | sin | 12 | NA |
| 778 | 107.06 | radiation | 10 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 785 | 107.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 795 | 107.12 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 803 | 107.14 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 14 |
| 830 | 107.22 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 5 | 10 |
| 838 | 107.24 | wind | 3 | 720 | < th | dose independent | rect. | 4 | 6 |
| 839 | 107.24 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 10 |
| 856 | 107.27 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 22 |
| 865 | 107.30 | wind | 9 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 915 | 107.38 | radiation | 10 | 720 | < th | dose independent | rect. | 22 | 19 |
| 926 | 107.40 | radiation | 10 | 720 | < th | dose independent | sin | 14 | NA |
| 943 | 107.42 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 983 | 107.49 | wind | 1 | 720 | > th | dose independent | rect. | 5 | 14 |