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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0574500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Replication factor C conserved region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0337) R2 : 0.369
β1 : -1.45 (0.123) R2dD : 0.198 R2D : 0.18
β2 : 0.953 (0.0842) R2dC : 0.179 R2C : 0.176
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0719) R2dN8 : 0.00721 R2N8 : -0.00764
σ : 0.633
deviance : 182.85
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_____
C
peak time of C : 20.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.06 0.585 3.98 -1.71 0.966 -0.663 -0.963 2.34 -0.337 21 29.36 1614 -- --
165.57 0.599 3.96 -1.49 0.91 -0.697 -0.942 -- -0.294 21 29.99 1736 -- --
158.22 0.586 3.98 -1.68 0.967 -0.661 -- 2.28 -0.337 21 29.3 1613 -- --
167.86 0.603 3.95 -1.47 0.91 -0.73 -- -- -0.275 21.2 29.99 1766 -- --
181.68 0.628 3.92 -1.52 -- -0.925 -- 2.24 -0.239 -- 27.35 870 -- --
180.32 0.63 3.93 -1.47 0.953 -- -0.892 -- -0.141 20.6 -- -- -- --
182.85 0.633 3.93 -1.45 0.953 -- -- -- -0.142 20.7 -- -- -- --
188.56 0.64 3.93 -1.49 -- -0.97 -- -- -0.268 -- 29.93 870 -- --
224.98 0.699 3.95 -- 0.897 -0.72 -- -- -0.131 21.1 29.98 1829 -- --
234.22 0.715 3.9 -1.45 -- -- -- -- -0.15 -- -- -- -- --
238.05 0.722 3.89 -- 0.958 -- -- -- 0.0195 20.6 -- -- -- --
248.55 0.734 3.91 -- -- -0.915 -- -- -0.139 -- 29.92 859 -- --
289.61 0.794 3.87 -- -- -- -- -- 0.0112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.38 radiation 10 1440 < th dose independent rect. 16 1
2 153.16 radiation 1 1440 > th dose dependent rect. 16 1
3 153.29 radiation 40 1440 < th dose dependent rect. 16 1
4 153.50 radiation 20 1440 < th dose dependent rect. 16 1
6 154.00 radiation 20 1440 < th dose independent sin 15 NA
10 154.72 radiation 20 1440 < th dose independent rect. 13 11
13 154.75 radiation 20 1440 < th dose independent rect. 13 5
16 154.75 radiation 20 1440 < th dose independent rect. 13 14
17 154.75 radiation 20 1440 < th dose independent rect. 13 17
39 154.98 radiation 10 1440 < th dose dependent rect. 12 20
51 155.07 radiation 40 1440 < th dose dependent rect. 10 21
60 155.17 radiation 1 1440 > th dose dependent rect. 10 22
76 155.36 radiation 20 1440 < th dose independent rect. 10 14
79 155.38 radiation 20 1440 < th dose independent rect. 10 8
81 155.38 radiation 20 1440 < th dose independent rect. 10 11
83 155.38 radiation 20 1440 < th dose independent rect. 10 17
84 155.38 radiation 20 1440 < th dose independent rect. 10 20
90 155.42 radiation 1 1440 > th dose dependent rect. 10 9
103 155.44 radiation 40 1440 < th dose dependent rect. 10 14
108 155.46 radiation 40 1440 < th dose dependent rect. 10 17
109 155.47 radiation 40 1440 < th dose dependent rect. 10 9
118 155.54 radiation 20 1440 > th dose dependent rect. 10 3
122 155.60 radiation 20 1440 < th dose dependent sin 14 NA
193 155.96 radiation 40 1440 < th dose independent rect. 10 3
227 156.20 radiation 30 1440 > th dose independent rect. 10 3
245 156.26 radiation 1 1440 > th dose dependent rect. 16 14
261 156.37 radiation 1 1440 > th dose dependent sin 18 NA
290 156.44 radiation 20 1440 > th dose dependent rect. 10 5
300 156.49 radiation 10 1440 < th dose dependent rect. 6 18
306 156.51 radiation 10 1440 < th dose dependent rect. 6 13
309 156.51 radiation 10 1440 < th dose dependent rect. 6 21
311 156.53 radiation 1 1440 > th dose dependent rect. 16 3
355 156.64 radiation 30 1440 > th dose independent rect. 10 22
372 156.65 radiation 30 4320 > th dose dependent rect. 16 16
420 156.72 radiation 10 1440 < th dose dependent sin 22 NA
428 156.74 radiation 30 1440 > th dose independent rect. 10 7
458 156.81 radiation 40 1440 < th dose dependent rect. 16 14
465 156.83 wind 7 4320 > th dose independent rect. 23 1
496 156.87 wind 9 4320 > th dose independent rect. 21 3
513 156.90 wind 9 4320 > th dose dependent rect. 21 3
520 156.91 radiation 10 1440 < th dose dependent rect. 2 22
538 156.94 wind 7 4320 > th dose dependent rect. 23 1
539 156.94 radiation 10 1440 < th dose dependent rect. 2 17
544 156.94 radiation 10 1440 < th dose dependent rect. 20 23
555 156.96 radiation 10 1440 < th dose dependent no NA NA
594 156.99 radiation 1 1440 > th dose dependent rect. 6 13
606 156.99 radiation 1 1440 > th dose dependent rect. 14 23
611 157.00 radiation 40 1440 < th dose dependent rect. 16 8
654 157.03 radiation 40 1440 < th dose dependent rect. 6 18
657 157.03 radiation 40 1440 < th dose dependent rect. 13 23
658 157.04 radiation 1 1440 > th dose dependent no NA NA
716 157.05 radiation 40 1440 < th dose dependent rect. 6 13
732 157.05 radiation 40 1440 < th dose dependent rect. 6 21
733 157.05 radiation 40 1440 < th dose dependent rect. 2 22
752 157.06 radiation 1 1440 > th dose dependent rect. 16 23
755 157.07 radiation 40 1440 < th dose dependent rect. 2 17
764 157.08 radiation 40 1440 < th dose dependent no NA NA
771 157.08 radiation 40 1440 < th dose dependent rect. 21 22
799 157.10 radiation 40 1440 < th dose dependent rect. 11 1
800 157.10 radiation 40 1440 < th dose dependent rect. 16 3
823 157.12 radiation 40 1440 < th dose dependent rect. 16 11
866 157.15 humidity 70 1440 < th dose independent rect. 11 1
869 157.15 radiation 20 1440 < th dose dependent rect. 13 11
913 157.19 radiation 20 1440 < th dose dependent rect. 13 6
916 157.19 radiation 20 1440 < th dose dependent rect. 13 14
936 157.22 radiation 40 1440 < th dose dependent rect. 16 23
948 157.25 radiation 40 1440 < th dose dependent rect. 10 3