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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0574400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING finger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.019) R2 : 0.00408
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0546 (0.0399) R2dN8 : 0.00527 R2N8 : 0.00408
σ : 0.357
deviance : 58.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.03 0.352 2.9 -0.113 0.092 7.44 0.0142 -17.1 0.0598 5.27 47 9 -- --
56.03 0.351 2.85 -0.000103 0.092 0.847 0.0137 -- 0.0598 5.27 47 9 -- --
56.03 0.349 2.9 -0.113 0.092 7.44 -- -17.1 0.0598 5.27 47 9 -- --
56.03 0.349 2.85 -0.000251 0.0922 0.847 -- -- 0.0596 5.26 46.38 8 -- --
56.48 0.35 2.9 -0.108 -- 7.4 -- -17.1 0.0621 -- 46.9 7 -- --
58.11 0.357 2.85 0.035 0.0886 -- 0.0326 -- 0.0569 6.24 -- -- -- --
58.11 0.357 2.85 0.0352 0.0888 -- -- -- 0.0568 6.09 -- -- -- --
56.48 0.352 2.85 0.00359 -- 0.835 -- -- 0.062 -- 46.9 7 -- --
56.03 0.349 2.85 -- 0.0921 0.847 -- -- 0.0597 5.26 46.32 8 -- --
58.52 0.357 2.86 0.0377 -- -- -- -- 0.0588 -- -- -- -- --
58.14 0.357 2.85 -- 0.0894 -- -- -- 0.0528 6.07 -- -- -- --
56.48 0.351 2.85 -- -- 0.836 -- -- 0.0616 -- 46.9 7 -- --
58.55 0.357 2.86 -- -- -- -- -- 0.0546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.99 humidity 90.0 30 < th dose independent rect. 20 1
2 54.00 temperature 25.0 30 > th dose independent rect. 20 1
3 54.00 temperature 10.0 1440 > th dose independent rect. 21 1
6 54.00 temperature 30.0 1440 < th dose independent rect. 21 1
10 54.00 humidity 50.0 1440 > th dose independent rect. 21 1
16 54.00 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 54.00 radiation 1.0 1440 < th dose independent rect. 21 1
37 54.00 temperature 10.0 1440 > th dose independent rect. 22 23
40 54.00 radiation 30.0 1440 < th dose dependent rect. 21 1
43 54.02 wind 3.0 30 > th dose independent rect. 20 1
44 54.03 wind 1.0 30 > th dose dependent rect. 20 1
45 54.03 temperature 25.0 30 > th dose dependent rect. 20 1
47 54.04 humidity 90.0 30 < th dose dependent rect. 20 1
48 54.05 temperature 15.0 30 > th dose dependent rect. 20 1
50 54.05 atmosphere 1005.0 30 > th dose dependent rect. 20 1
56 54.07 radiation 40.0 14400 < th dose dependent rect. 21 1
58 54.08 wind 9.0 30 < th dose independent rect. 20 1
59 54.08 temperature 10.0 30 > th dose independent rect. 20 1
61 54.08 temperature 30.0 30 < th dose independent rect. 20 1
62 54.08 humidity 50.0 30 > th dose independent rect. 20 1
65 54.08 atmosphere 995.0 30 > th dose independent rect. 20 1
67 54.08 atmosphere 1010.0 30 < th dose independent rect. 20 1
69 54.08 radiation 1.0 30 < th dose independent rect. 20 1
74 54.08 precipitation 0.1 30 < th dose independent rect. 20 1
75 54.08 temperature 10.0 30 > th dose independent rect. 21 23
76 54.08 radiation 1.0 30 < th dose dependent rect. 20 1
82 54.08 precipitation 0.1 30 < th dose dependent rect. 20 1
83 54.09 wind 5.0 30 < th dose independent rect. 20 1
90 54.13 wind 9.0 30 < th dose dependent rect. 20 1
91 54.13 humidity 50.0 30 > th dose dependent rect. 20 1
95 54.16 atmosphere 1015.0 30 < th dose dependent rect. 20 1
106 54.34 temperature 30.0 30 < th dose dependent rect. 20 1
113 54.48 temperature 25.0 10 > th dose independent rect. 4 1
118 54.50 temperature 25.0 90 > th dose dependent rect. 4 1
150 54.57 humidity 90.0 10 < th dose independent rect. 4 1
156 54.73 wind 1.0 30 > th dose dependent rect. 4 1
157 54.74 wind 9.0 30 < th dose independent rect. 21 23
169 55.12 atmosphere 995.0 30 > th dose independent rect. 21 23
173 55.24 wind 1.0 30 > th dose independent rect. 4 1
175 55.31 wind 3.0 10 > th dose dependent rect. 8 1
182 55.57 precipitation 0.1 10 < th dose independent rect. 21 23
184 55.57 precipitation 0.1 10 < th dose dependent rect. 21 23
190 55.65 temperature 20.0 90 < th dose independent rect. 7 2
191 55.65 temperature 20.0 10 < th dose independent rect. 8 2
200 55.65 temperature 20.0 90 < th dose dependent rect. 7 2
201 55.65 temperature 20.0 10 < th dose dependent rect. 8 2
214 55.67 wind 5.0 10 > th dose independent rect. 8 1
277 55.71 wind 7.0 1440 < th dose independent rect. 5 1
279 55.71 temperature 10.0 1440 > th dose independent rect. 5 1
282 55.71 temperature 30.0 1440 < th dose independent rect. 5 1
289 55.71 humidity 50.0 1440 > th dose independent rect. 5 1
298 55.71 atmosphere 995.0 1440 > th dose independent rect. 5 1
299 55.71 atmosphere 1015.0 1440 < th dose independent rect. 5 1
300 55.71 radiation 20.0 1440 < th dose independent rect. 5 1
313 55.71 temperature 10.0 1440 > th dose independent rect. 6 23
329 55.72 wind 3.0 30 < th dose dependent rect. 4 1
371 55.77 humidity 50.0 30 > th dose independent rect. 21 23
372 55.77 humidity 80.0 270 < th dose dependent rect. 4 4
378 55.81 humidity 90.0 30 > th dose independent rect. 4 1
381 55.83 humidity 60.0 270 < th dose independent rect. 9 1
416 55.87 humidity 80.0 30 > th dose dependent rect. 4 1
417 55.87 atmosphere 1010.0 30 < th dose dependent rect. 4 1
418 55.89 temperature 25.0 30 < th dose independent rect. 4 1
423 55.90 humidity 60.0 90 < th dose dependent rect. 10 1
441 55.91 humidity 50.0 720 < th dose dependent rect. 17 19
445 55.92 temperature 30.0 30 < th dose dependent rect. 4 1
463 55.93 humidity 60.0 720 < th dose dependent rect. 9 1
479 55.93 humidity 60.0 720 < th dose dependent rect. 18 17
536 55.96 wind 5.0 30 < th dose independent rect. 4 1
573 55.97 temperature 10.0 30 > th dose independent rect. 4 1
576 55.97 humidity 50.0 30 > th dose independent rect. 4 1
580 55.97 atmosphere 1005.0 10 > th dose independent rect. 4 1
581 55.97 atmosphere 995.0 30 > th dose independent rect. 4 1
584 55.97 atmosphere 1010.0 30 < th dose independent rect. 4 1
586 55.97 radiation 1.0 30 < th dose independent rect. 4 1
591 55.97 precipitation 0.1 30 < th dose independent rect. 4 1
593 55.97 temperature 10.0 30 > th dose independent rect. 5 23
594 55.97 atmosphere 995.0 30 > th dose independent rect. 5 23
599 55.97 radiation 10.0 30 < th dose dependent rect. 4 1
603 55.97 precipitation 0.1 30 < th dose dependent rect. 4 1
617 55.99 temperature 10.0 30 > th dose dependent rect. 4 1
651 56.00 humidity 60.0 720 > th dose independent rect. 5 6
653 56.00 humidity 50.0 720 < th dose independent rect. 17 19
658 56.00 atmosphere 995.0 10 > th dose dependent rect. 4 1
669 56.01 humidity 50.0 720 < th dose independent rect. 11 1
695 56.01 humidity 50.0 270 < th dose dependent rect. 11 4
733 56.02 humidity 50.0 270 < th dose independent rect. 10 5
768 56.02 humidity 50.0 10 < th dose dependent sin 10 NA
843 56.02 humidity 50.0 10 < th dose dependent rect. 15 21
851 56.03 humidity 50.0 10 < th dose independent rect. 11 1