Os10g0572000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0572000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : GTP-binding protein, HSR1-related domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.88 | 0.443 | 5.89 | 0.508 | 0.901 | -1.07 | -0.954 | 2.2 | -0.141 | 24 | 19.11 | 1853 | -- | -- |
| 91.94 | 0.447 | 5.91 | 0.313 | 0.915 | -1.15 | -0.751 | -- | -0.126 | 0.281 | 15.87 | 9985 | -- | -- |
| 92.68 | 0.448 | 5.89 | 0.498 | 0.881 | -1.06 | -- | 2.04 | -0.152 | 0.139 | 18.6 | 1709 | -- | -- |
| 94.2 | 0.452 | 5.92 | 0.285 | 0.909 | -1.3 | -- | -- | -0.131 | 0.331 | 11.28 | 9257 | -- | -- |
| 108.25 | 0.487 | 5.89 | 0.372 | -- | -1.67 | -- | 2.72 | -0.132 | -- | 18.6 | 1709 | -- | -- |
| 117.21 | 0.508 | 6.01 | -0.458 | 0.863 | -- | -0.936 | -- | -0.527 | 0.324 | -- | -- | -- | -- |
| 120.99 | 0.515 | 6.01 | -0.422 | 0.866 | -- | -- | -- | -0.523 | 0.354 | -- | -- | -- | -- |
| 116.32 | 0.505 | 5.94 | -0.0819 | -- | -1.55 | -- | -- | -0.262 | -- | 18.6 | 1709 | -- | -- |
| 95.6 | 0.455 | 5.94 | -- | 0.902 | -1.13 | -- | -- | -0.204 | 0.35 | 11.66 | 9151 | -- | -- |
| 168.13 | 0.606 | 5.99 | -0.393 | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
| 125.69 | 0.524 | 6 | -- | 0.86 | -- | -- | -- | -0.476 | 0.328 | -- | -- | -- | -- |
| 116.49 | 0.504 | 5.94 | -- | -- | -1.57 | -- | -- | -0.25 | -- | 18.6 | 1709 | -- | -- |
| 172.2 | 0.613 | 5.98 | -- | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 12 | 89.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 19 | 89.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 29 | 89.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 53 | 89.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 79 | 89.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 88 | 89.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 94 | 89.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 102 | 89.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 123 | 89.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 145 | 89.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 206 | 89.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 207 | 89.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 218 | 89.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 260 | 89.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 268 | 89.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 290 | 89.95 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 319 | 89.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 386 | 90.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 409 | 90.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 453 | 90.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 492 | 90.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 579 | 90.34 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 604 | 90.37 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 614 | 90.38 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 662 | 90.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 674 | 90.43 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 687 | 90.44 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 688 | 90.44 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 780 | 90.49 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 791 | 90.50 | radiation | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 807 | 90.51 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 850 | 90.54 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 858 | 90.55 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 894 | 90.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 943 | 90.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 951 | 90.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 964 | 90.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 969 | 90.62 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |