Os10g0571200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate kinase isozyme G, chloroplast (EC 2.7.1.40) (Fragment).
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Os10g0571200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate kinase isozyme G, chloroplast (EC 2.7.1.40) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.15 | 0.513 | 7.54 | -2.54 | 1.91 | -0.836 | -2.04 | -2.36 | -0.0941 | 12.9 | 24.13 | 249 | -- | -- |
| 121.14 | 0.513 | 7.49 | -2.19 | 1.95 | -1.08 | -2.25 | -- | 0.00663 | 13.1 | 24.2 | 237 | -- | -- |
| 133.93 | 0.543 | 7.57 | -2.94 | 2 | -0.676 | -- | -4.16 | -0.174 | 12.5 | 22.32 | 133 | -- | -- |
| 141.45 | 0.554 | 7.5 | -2.26 | 2.02 | -1.16 | -- | -- | -0.00457 | 12.9 | 24.3 | 158 | -- | -- |
| 300.59 | 0.807 | 7.51 | -2.16 | -- | -1.8 | -- | -0.678 | 0.103 | -- | 13.21 | 893 | -- | -- |
| 142.95 | 0.561 | 7.52 | -2.38 | 1.72 | -- | -2.23 | -- | -0.113 | 12.3 | -- | -- | -- | -- |
| 163.91 | 0.6 | 7.52 | -2.47 | 1.73 | -- | -- | -- | -0.126 | 12.1 | -- | -- | -- | -- |
| 300.97 | 0.808 | 7.49 | -2.03 | -- | -1.8 | -- | -- | 0.138 | -- | 13.58 | 894 | -- | -- |
| 268.29 | 0.763 | 7.42 | -- | 2.2 | -1.75 | -- | -- | 0.381 | 13.2 | 22.09 | 176 | -- | -- |
| 352.88 | 0.878 | 7.56 | -2.52 | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
| 324.14 | 0.842 | 7.46 | -- | 1.77 | -- | -- | -- | 0.149 | 12.1 | -- | -- | -- | -- |
| 396.72 | 0.928 | 7.42 | -- | -- | -2.47 | -- | -- | 0.471 | -- | 15.9 | 918 | -- | -- |
| 520.42 | 1.06 | 7.49 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.40 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 2 | 118.45 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 8 | 119.04 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 10 | 119.09 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 11 | 119.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 12 | 119.09 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 31 | 119.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 33 | 119.41 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 41 | 119.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 45 | 119.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 46 | 119.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 54 | 119.54 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 59 | 119.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 138 | 119.90 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 180 | 120.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 200 | 120.07 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 201 | 120.07 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 11 |
| 211 | 120.10 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 243 | 120.18 | temperature | 20 | 90 | > th | dose dependent | sin | 20 | NA |
| 292 | 120.32 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 305 | 120.35 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 309 | 120.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 321 | 120.44 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 349 | 120.54 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 359 | 120.59 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 376 | 120.59 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 419 | 120.66 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 438 | 120.71 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 10 |
| 460 | 120.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 463 | 120.73 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 7 |
| 500 | 120.79 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 603 | 120.82 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 695 | 121.05 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 716 | 121.12 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 875 | 121.47 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 973 | 121.65 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 14 |
| 995 | 121.72 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 997 | 121.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |