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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0570700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosome-inactivating protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0234) R2 : 1.98e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00468 (0.0493) R2dN8 : 2.55e-05 R2N8 : 1.98e-05
σ : 0.441
deviance : 89.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.37 0.424 3.36 -0.0626 0.148 -0.403 -0.171 1.55 -0.018 7.02 1.109 16 -- --
83.6 0.426 3.34 0.0113 0.174 -0.316 -0.338 -- -0.00875 6.45 1.1 16 -- --
81.43 0.42 3.36 -0.0649 0.149 -0.405 -- 1.59 -0.0168 7.35 1.1 16 -- --
83.82 0.426 3.34 0.008 0.168 -0.319 -- -- -0.000669 7.17 1.098 16 -- --
82.48 0.423 3.36 -0.0759 -- -0.468 -- 1.66 -0.0156 -- 1.118 16 -- --
85.72 0.434 3.34 0.0483 0.241 -- -0.369 -- -0.00582 5.86 -- -- -- --
86.03 0.434 3.34 0.0462 0.24 -- -- -- -0.00409 6.21 -- -- -- --
85.19 0.43 3.34 0.00109 -- -0.355 -- -- 0.0044 -- 1.116 16 -- --
83.82 0.426 3.34 -- 0.168 -0.32 -- -- -0.0015 7.16 1.097 16 -- --
89.01 0.441 3.34 0.0528 -- -- -- -- 0.00118 -- -- -- -- --
86.08 0.434 3.34 -- 0.241 -- -- -- -0.00923 6.2 -- -- -- --
85.19 0.43 3.34 -- -- -0.355 -- -- 0.00435 -- 1.117 16 -- --
89.09 0.441 3.34 -- -- -- -- -- -0.00468 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.99 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 72.20 radiation 1.0 43200 < th dose dependent rect. 3 1
3 72.45 atmosphere 1005.0 90 > th dose dependent rect. 2 1
10 73.06 temperature 25.0 90 > th dose dependent rect. 2 1
11 73.07 temperature 25.0 90 > th dose independent rect. 2 1
20 73.19 wind 3.0 30 < th dose independent rect. 2 1
28 73.22 wind 9.0 1440 < th dose independent rect. 3 1
29 73.22 temperature 10.0 1440 > th dose independent rect. 3 1
32 73.22 temperature 30.0 1440 < th dose independent rect. 3 1
36 73.22 humidity 50.0 1440 > th dose independent rect. 3 1
45 73.22 atmosphere 995.0 1440 > th dose independent rect. 3 1
46 73.22 radiation 1.0 1440 < th dose independent rect. 3 1
66 73.22 temperature 10.0 1440 > th dose independent rect. 4 23
69 73.22 wind 7.0 30 < th dose dependent rect. 2 1
83 73.24 atmosphere 1005.0 30 > th dose independent rect. 2 1
87 73.26 temperature 10.0 30 > th dose independent rect. 2 1
89 73.26 temperature 30.0 30 < th dose independent rect. 2 1
90 73.26 humidity 50.0 30 > th dose independent rect. 2 1
93 73.26 atmosphere 995.0 30 > th dose independent rect. 2 1
94 73.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 73.26 radiation 1.0 30 < th dose independent rect. 2 1
101 73.26 precipitation 0.1 30 < th dose independent rect. 2 1
102 73.26 temperature 10.0 30 > th dose independent rect. 3 23
103 73.26 humidity 50.0 30 > th dose dependent rect. 2 1
106 73.26 radiation 1.0 30 < th dose dependent rect. 2 1
111 73.26 precipitation 0.1 30 < th dose dependent rect. 2 1
115 73.28 humidity 90.0 30 > th dose independent rect. 2 1
119 73.32 atmosphere 1015.0 30 < th dose dependent rect. 2 1
122 73.39 temperature 30.0 30 < th dose dependent rect. 2 1
123 73.42 wind 1.0 30 > th dose independent rect. 2 1
132 73.55 precipitation 0.1 30 < th dose independent rect. 3 23
135 73.55 precipitation 0.1 30 < th dose dependent rect. 3 23
177 74.10 wind 9.0 30 < th dose independent rect. 3 23
190 75.55 humidity 50.0 30 > th dose independent rect. 3 23
241 77.97 humidity 90.0 90 < th dose independent rect. 2 1
248 78.38 precipitation 0.1 720 < th dose independent rect. 15 8
249 78.38 precipitation 0.1 720 < th dose dependent rect. 15 8
251 78.46 atmosphere 995.0 720 > th dose independent rect. 23 16
255 78.71 temperature 10.0 720 > th dose independent rect. 15 8
256 78.71 temperature 10.0 720 > th dose independent rect. 23 16
259 78.86 temperature 10.0 720 > th dose independent rect. 3 8
260 78.86 atmosphere 995.0 720 > th dose independent rect. 3 8
261 78.86 temperature 10.0 720 > th dose independent rect. 11 16
265 78.96 humidity 50.0 720 > th dose independent rect. 3 8
268 79.02 temperature 30.0 30 < th dose independent rect. 3 23
269 79.04 wind 9.0 720 < th dose independent rect. 3 8
270 79.06 precipitation 0.1 720 < th dose independent rect. 11 16
271 79.06 precipitation 0.1 720 < th dose dependent rect. 11 16
288 79.51 temperature 25.0 270 > th dose independent rect. 23 4
290 79.57 radiation 10.0 10 > th dose independent rect. 6 1
316 79.57 radiation 10.0 10 > th dose dependent rect. 6 1
346 79.68 atmosphere 1015.0 30 < th dose independent rect. 3 23
355 79.86 temperature 10.0 30 > th dose dependent rect. 3 23
361 79.98 radiation 10.0 30 < th dose dependent rect. 3 23
363 80.00 wind 1.0 30 < th dose independent rect. 21 6
366 80.00 atmosphere 995.0 720 > th dose independent rect. 15 8
369 80.06 atmosphere 995.0 720 > th dose independent rect. 11 16
373 80.09 atmosphere 1005.0 10 > th dose dependent rect. 2 6
375 80.10 humidity 90.0 90 < th dose independent rect. 1 3
386 80.21 wind 1.0 30 < th dose independent rect. 13 14
392 80.28 temperature 25.0 270 > th dose dependent rect. 23 4
403 80.35 wind 1.0 10 < th dose independent rect. 6 21
412 80.40 atmosphere 1015.0 720 < th dose independent rect. 3 8
420 80.45 precipitation 0.1 720 < th dose independent rect. 3 8
422 80.45 precipitation 0.1 720 < th dose dependent rect. 3 8
426 80.49 precipitation 0.1 720 < th dose independent rect. 19 8
429 80.49 precipitation 0.1 720 < th dose dependent rect. 19 8
430 80.50 atmosphere 995.0 720 > th dose independent rect. 7 8
440 80.53 radiation 10.0 30 < th dose independent rect. 3 23
441 80.54 wind 3.0 30 < th dose dependent rect. 2 6
454 80.68 humidity 80.0 14400 < th dose dependent rect. 4 5
456 80.70 humidity 50.0 720 > th dose independent rect. 23 16
461 80.72 wind 9.0 720 < th dose independent rect. 19 8
463 80.73 wind 9.0 30 < th dose dependent rect. 3 23
465 80.76 precipitation 0.1 720 < th dose independent rect. 23 16
466 80.76 precipitation 0.1 720 < th dose dependent rect. 23 16
468 80.77 precipitation 0.1 720 < th dose independent rect. 15 16
469 80.77 precipitation 0.1 720 < th dose dependent rect. 15 16
491 80.83 temperature 10.0 720 > th dose independent rect. 7 8
492 80.83 atmosphere 1015.0 720 < th dose independent rect. 7 8
493 80.83 temperature 10.0 720 > th dose independent rect. 15 16
511 80.93 precipitation 0.1 720 < th dose independent rect. 7 8
513 80.93 precipitation 0.1 720 < th dose dependent rect. 7 8
514 80.94 atmosphere 995.0 720 > th dose independent rect. 3 16
515 80.94 atmosphere 995.0 720 > th dose independent rect. 15 16
517 80.96 temperature 10.0 720 > th dose independent rect. 19 8
518 80.96 temperature 30.0 720 < th dose independent rect. 19 8
519 80.96 humidity 50.0 720 > th dose independent rect. 19 8
520 80.96 atmosphere 995.0 720 > th dose independent rect. 19 8
521 80.96 radiation 1.0 720 < th dose independent rect. 19 8
526 80.96 temperature 10.0 720 > th dose independent rect. 3 16
527 80.96 wind 1.0 30 < th dose independent rect. 8 19
529 80.96 radiation 1.0 720 < th dose dependent rect. 19 8
549 81.10 wind 3.0 30 < th dose dependent rect. 22 5
550 81.12 atmosphere 995.0 30 > th dose dependent rect. 3 23
552 81.13 wind 1.0 30 > th dose independent rect. 3 23
556 81.16 humidity 70.0 14400 > th dose independent rect. 8 1
559 81.17 wind 9.0 720 < th dose independent rect. 15 8
561 81.18 radiation 40.0 720 < th dose independent rect. 15 8
562 81.19 wind 1.0 720 > th dose independent rect. 15 8
568 81.23 wind 1.0 10 < th dose independent rect. 2 5
579 81.33 humidity 70.0 14400 > th dose independent rect. 4 5
582 81.33 wind 9.0 720 < th dose independent rect. 23 16
584 81.34 humidity 70.0 14400 > th dose independent rect. 1 8
591 81.35 humidity 70.0 14400 > th dose independent rect. 6 3
599 81.36 wind 1.0 14400 < th dose dependent rect. 6 1
602 81.38 humidity 70.0 14400 < th dose independent rect. 8 1
605 81.39 atmosphere 1000.0 10 > th dose independent rect. 16 10
614 81.46 wind 3.0 30 < th dose dependent rect. 13 14
622 81.49 temperature 25.0 720 > th dose dependent rect. 3 5
623 81.50 precipitation 0.1 720 < th dose independent rect. 3 16
624 81.50 precipitation 0.1 720 < th dose dependent rect. 3 16
653 81.56 humidity 90.0 10 > th dose independent rect. 24 3
669 81.62 atmosphere 1000.0 10 > th dose independent rect. 14 12
678 81.65 wind 3.0 30 < th dose dependent rect. 20 7
679 81.66 humidity 70.0 14400 < th dose independent rect. 21 12
700 81.70 temperature 25.0 720 > th dose independent rect. 3 6
702 81.70 radiation 40.0 30 < th dose independent rect. 3 23
704 81.70 temperature 25.0 30 > th dose dependent rect. 16 19
720 81.78 wind 3.0 30 < th dose dependent rect. 15 12
732 81.81 wind 1.0 10 > th dose independent sin 15 NA
740 81.83 wind 1.0 30 > th dose dependent rect. 2 1
758 81.89 humidity 50.0 720 > th dose independent rect. 7 8
760 81.89 temperature 10.0 90 > th dose dependent rect. 3 8
763 81.90 wind 1.0 14400 < th dose independent rect. 6 1
765 81.90 humidity 80.0 720 > th dose dependent rect. 3 1
807 81.96 atmosphere 1015.0 720 < th dose independent rect. 3 16
822 81.97 temperature 25.0 30 > th dose dependent rect. 24 11
826 81.98 humidity 90.0 1440 > th dose independent rect. 2 1
831 81.98 temperature 25.0 30 > th dose dependent rect. 14 21
863 82.05 humidity 60.0 10 > th dose independent rect. 14 12
880 82.10 humidity 90.0 1440 < th dose independent rect. 2 2
895 82.14 atmosphere 1015.0 1440 < th dose independent rect. 3 1
903 82.16 wind 1.0 14400 > th dose independent rect. 4 3
908 82.17 wind 1.0 14400 < th dose independent rect. 4 3
911 82.17 wind 9.0 720 < th dose independent rect. 15 16
918 82.18 humidity 50.0 30 > th dose dependent rect. 3 23
924 82.19 wind 3.0 30 < th dose dependent rect. 2 11
926 82.20 radiation 40.0 30 < th dose independent rect. 14 12
940 82.23 radiation 30.0 10 < th dose dependent rect. 16 10
958 82.27 humidity 50.0 30 > th dose independent rect. 16 10
959 82.27 radiation 10.0 10 < th dose independent rect. 16 10
963 82.28 humidity 50.0 10 > th dose independent rect. 2 14
966 82.29 wind 5.0 14400 < th dose independent rect. 11 1
969 82.29 humidity 90.0 1440 < th dose independent rect. 1 4
976 82.30 wind 9.0 10 < th dose independent rect. 16 10
979 82.30 radiation 30.0 10 < th dose independent rect. 16 10
984 82.31 precipitation 0.1 10 < th dose independent rect. 2 14
989 82.31 precipitation 0.1 10 < th dose dependent rect. 2 14
990 82.32 wind 1.0 10 > th dose independent sin 6 NA
995 82.32 wind 5.0 14400 < th dose independent rect. 11 4