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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0569800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.08) R2 : 0.426
β1 : 0.4 (0.571) R2dD : 0.0076 R2D : 0.0476
β2 : 0.928 (0.111) R2dC : 0.0894 R2C : 0.0738
β3 : 0.142 (0.379) R2dE : 0.00154 R2E : -0.0293
β4 : 2.72 (0.441) R2dD*C : 0.0483 R2D*C : 0.0137
β5 : -11.1 (3.13) R2dD*E : 0.277 R2D*E : 0.254
γ1 : 0.397 (0.101) R2dN8 : 0.0284 R2N8 : -0.0103
σ : 0.854
deviance : 330.55
__
_____
C
peak time of C : 2.2
E
wheather : temperature
threshold : 30.14
memory length : 1577
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.55 0.854 4.83 0.4 0.928 0.142 2.72 -11.1 0.397 2.2 30.14 1577 -- --
353.91 0.876 4.5 2.08 0.864 -1.04 2.07 -- 0.502 2.02 29.4 4813 -- --
355.26 0.878 4.82 0.542 0.904 0.0453 -- -10.9 0.387 2.26 30.3 1704 -- --
360.22 0.884 4.55 2.32 0.81 -1.18 -- -- 0.714 1.61 29.4 1768 -- --
401.24 0.938 4.65 1.43 -- -0.279 -- -9.72 0.557 -- 30.3 1704 -- --
387.48 0.923 4.56 2.03 0.855 -- 2.54 -- 0.65 2.14 -- -- -- --
411.46 0.95 4.56 1.95 0.867 -- -- -- 0.635 2.41 -- -- -- --
374.1 0.901 4.45 2.55 -- -0.997 -- -- 0.935 -- 26.7 101 -- --
492.35 1.03 4.58 -- 0.926 -0.655 -- -- 0.556 2.01 29.47 1881 -- --
455.82 0.998 4.56 1.99 -- -- -- -- 0.656 -- -- -- -- --
511.98 1.06 4.61 -- 0.904 -- -- -- 0.417 2.45 -- -- -- --
500.46 1.04 4.58 -- -- -0.825 -- -- 0.575 -- 26.71 66 -- --
560.24 1.1 4.61 -- -- -- -- -- 0.435 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.09 temperature 30.0 1440 > th dose independent rect. 10 1
2 325.49 temperature 30.0 1440 < th dose independent rect. 10 1
6 326.90 precipitation 0.1 43200 > th dose dependent rect. 16 2
7 327.26 temperature 30.0 1440 > th dose dependent rect. 11 1
18 328.07 temperature 30.0 1440 > th dose independent rect. 10 7
19 328.09 temperature 30.0 1440 > th dose independent rect. 10 5
20 328.15 precipitation 0.1 43200 > th dose dependent rect. 17 4
24 328.23 temperature 30.0 1440 < th dose independent rect. 10 7
25 328.25 temperature 30.0 1440 < th dose independent rect. 10 5
56 328.90 temperature 30.0 1440 < th dose independent rect. 19 17
73 328.93 temperature 30.0 1440 < th dose independent rect. 7 5
77 329.00 temperature 30.0 4320 > th dose independent rect. 16 1
96 329.09 temperature 30.0 1440 < th dose independent rect. 5 7
98 329.13 temperature 30.0 1440 < th dose independent rect. 22 14
114 329.15 temperature 30.0 1440 < th dose independent rect. 1 11
117 329.18 temperature 30.0 1440 < th dose independent rect. 3 9
147 329.47 temperature 30.0 1440 > th dose dependent sin 6 NA
167 329.57 temperature 30.0 1440 < th dose independent rect. 16 1
171 329.62 temperature 30.0 1440 < th dose independent rect. 3 14
172 329.62 temperature 30.0 1440 < th dose independent rect. 19 22
175 329.63 temperature 30.0 1440 < th dose independent rect. 5 12
182 329.67 temperature 30.0 1440 < th dose independent rect. 22 19
188 329.76 temperature 30.0 1440 > th dose independent sin 5 NA
190 329.77 temperature 30.0 4320 > th dose independent rect. 15 21
193 329.79 radiation 1.0 43200 < th dose dependent rect. 22 6
199 329.88 precipitation 0.1 43200 > th dose dependent rect. 20 1
205 329.99 temperature 30.0 4320 < th dose independent rect. 14 22
207 330.01 temperature 30.0 1440 < th dose independent sin 5 NA
329 330.40 wind 7.0 43200 > th dose dependent rect. 18 4
371 330.57 wind 9.0 43200 > th dose independent rect. 17 13
390 330.70 temperature 25.0 4320 > th dose dependent rect. 3 4
451 331.03 wind 9.0 43200 > th dose dependent rect. 17 13
452 331.04 temperature 25.0 4320 < th dose independent rect. 3 4
454 331.04 radiation 1.0 43200 < th dose dependent rect. 19 9
480 331.20 temperature 30.0 1440 < th dose independent rect. 10 13
482 331.22 temperature 30.0 1440 < th dose independent rect. 10 11
486 331.24 temperature 30.0 1440 < th dose independent rect. 10 20
491 331.25 temperature 30.0 1440 < th dose independent rect. 10 18
504 331.29 temperature 25.0 4320 > th dose independent rect. 3 4
511 331.31 humidity 60.0 1440 < th dose independent rect. 11 2
551 331.57 wind 7.0 43200 > th dose independent rect. 18 4
560 331.67 wind 7.0 43200 < th dose independent rect. 19 2
562 331.70 temperature 30.0 1440 > th dose independent no NA NA
674 331.77 wind 9.0 43200 < th dose independent rect. 17 12
676 331.78 wind 7.0 43200 > th dose independent rect. 19 2
706 331.89 temperature 30.0 1440 < th dose independent rect. 3 20
707 331.89 temperature 30.0 1440 < th dose independent rect. 1 22
710 331.90 temperature 30.0 1440 < th dose independent rect. 5 18
722 331.91 temperature 30.0 1440 < th dose independent rect. 5 16
738 331.92 temperature 30.0 1440 < th dose independent rect. 7 23
746 331.94 wind 9.0 43200 > th dose independent rect. 17 7
752 331.94 temperature 30.0 1440 < th dose independent rect. 5 23
753 331.94 wind 7.0 43200 > th dose dependent rect. 17 8
754 331.95 temperature 30.0 1440 < th dose independent no NA NA
755 331.95 temperature 25.0 4320 < th dose independent rect. 5 1
773 331.95 temperature 30.0 1440 < th dose independent rect. 22 23
800 331.97 temperature 25.0 90 > th dose dependent rect. 13 22
801 331.98 humidity 60.0 1440 > th dose independent rect. 11 2
814 332.01 temperature 25.0 4320 > th dose independent rect. 5 2
882 332.24 wind 7.0 43200 < th dose independent rect. 18 4
900 332.25 temperature 30.0 4320 < th dose independent sin 11 NA
905 332.26 wind 9.0 43200 > th dose dependent rect. 20 2
911 332.31 temperature 30.0 4320 < th dose independent rect. 14 9
915 332.33 temperature 30.0 4320 < th dose independent rect. 14 7
920 332.35 temperature 30.0 4320 < th dose independent rect. 14 14
921 332.35 temperature 30.0 4320 < th dose independent rect. 14 16