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Os10g0569600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RIR1b protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0575) R2 : 0.311
β1 : 1.89 (0.21) R2dD : 0.128 R2D : 0.093
β2 : 0.671 (0.149) R2dC : 0.0318 R2C : 0.0401
β3 : -2.25 (0.213) R2dE : 0.182 R2E : 0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.126) R2dN8 : 0.019 R2N8 : -0.023
σ : 1.07
deviance : 525.5
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C
peak time of C : 5.94
E
wheather : wind
threshold : 7.8
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 3.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
516.31 1.07 10 2.16 0.722 -2.91 -0.449 -4.32 0.401 6.2 7 4320 18.2 4
525.34 1.07 10 1.89 0.685 -2.23 -0.288 -- 0.366 6.05 7.715 4321 18.2 3.97
516.58 1.06 10 2.16 0.722 -2.91 -- -4.32 0.401 6.08 7 4320 18.2 4.05
525.5 1.07 10 1.89 0.671 -2.25 -- -- 0.372 5.94 7.8 4321 18.2 3.98
538.38 1.08 10 2.25 -- -3.09 -- -4.08 0.462 -- 7 4331 18.2 4.05
654.6 1.2 10.1 1.67 0.78 -- -0.68 -- 0.0617 6.17 -- -- -- --
655.7 1.2 10.1 1.66 0.777 -- -- -- 0.0637 6.06 -- -- -- --
543.73 1.09 10 1.8 -- -2.22 -- -- 0.353 -- 8.788 4321 18.3 4.01
605.67 1.15 10 -- 0.713 -2.19 -- -- 0.153 5.86 8.743 4320 18.5 4.06
687.02 1.22 10.1 1.68 -- -- -- -- 0.0813 -- -- -- -- --
728.29 1.26 10.1 -- 0.802 -- -- -- -0.121 5.95 -- -- -- --
621.31 1.16 10 -- -- -2.25 -- -- 0.201 -- 8.8 4321 18.3 3.93
761.64 1.29 10.1 -- -- -- -- -- -0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.74 wind 9.0 43200 > th dose independent rect. 16 2
2 481.65 wind 7.0 43200 > th dose independent rect. 17 13
3 482.03 wind 7.0 43200 < th dose independent rect. 17 13
14 484.86 wind 9.0 43200 < th dose independent rect. 16 2
30 491.18 wind 7.0 43200 > th dose dependent rect. 16 14
40 493.03 precipitation 0.1 43200 > th dose independent rect. 20 1
43 493.21 precipitation 0.1 43200 < th dose independent rect. 20 1
44 493.21 precipitation 0.1 43200 < th dose dependent rect. 20 1
51 493.72 precipitation 0.1 43200 > th dose dependent rect. 20 1
54 494.59 wind 9.0 43200 < th dose independent rect. 16 8
61 495.41 wind 7.0 43200 < th dose independent sin 11 NA
63 495.92 wind 7.0 43200 > th dose independent sin 11 NA
70 497.06 wind 9.0 43200 > th dose independent rect. 16 8
73 497.26 precipitation 0.1 43200 > th dose dependent rect. 17 6
88 500.34 wind 9.0 43200 > th dose dependent rect. 16 3
113 502.25 wind 7.0 43200 > th dose dependent sin 12 NA
212 509.12 wind 7.0 43200 > th dose dependent rect. 16 8
226 509.54 wind 7.0 43200 > th dose independent rect. 19 1
232 510.01 precipitation 0.1 43200 < th dose independent rect. 17 4
233 510.01 precipitation 0.1 43200 < th dose dependent rect. 17 4
238 510.21 precipitation 0.1 43200 > th dose independent rect. 17 4
272 512.22 precipitation 0.1 43200 > th dose dependent rect. 14 4
276 512.26 wind 5.0 43200 < th dose independent rect. 21 3
277 512.30 precipitation 0.1 43200 < th dose independent rect. 17 7
278 512.30 precipitation 0.1 43200 < th dose dependent rect. 17 7
281 512.37 precipitation 0.1 43200 > th dose independent rect. 17 7
311 513.72 wind 5.0 43200 > th dose independent rect. 21 3
359 515.41 precipitation 0.1 43200 < th dose independent rect. 19 3
360 515.41 precipitation 0.1 43200 < th dose dependent rect. 19 3
361 515.47 precipitation 0.1 43200 > th dose independent rect. 19 3
362 515.55 atmosphere 1005.0 43200 < th dose dependent rect. 15 5
369 515.80 precipitation 0.1 43200 > th dose dependent sin 17 NA
375 515.91 precipitation 0.1 43200 > th dose independent rect. 17 2
378 515.95 precipitation 0.1 43200 < th dose independent rect. 17 2
379 515.95 precipitation 0.1 43200 < th dose dependent rect. 17 2
381 515.99 atmosphere 1005.0 43200 < th dose dependent rect. 15 2
396 516.23 atmosphere 1005.0 43200 < th dose dependent rect. 14 10
423 516.42 atmosphere 1005.0 43200 < th dose dependent rect. 14 13
475 517.13 wind 5.0 43200 > th dose dependent rect. 21 3
494 517.32 atmosphere 1005.0 43200 < th dose dependent sin 16 NA
496 517.34 precipitation 0.1 43200 > th dose dependent rect. 12 6
498 517.37 wind 7.0 4320 < th dose independent rect. 18 4
505 517.47 wind 7.0 4320 < th dose independent rect. 18 9
510 517.58 atmosphere 1005.0 43200 < th dose dependent rect. 19 1
539 517.98 radiation 10.0 43200 > th dose independent rect. 8 1
555 518.17 wind 7.0 4320 > th dose independent rect. 18 9
569 518.46 wind 7.0 4320 > th dose independent rect. 18 4
571 518.49 precipitation 0.1 43200 < th dose independent rect. 19 5
572 518.49 precipitation 0.1 43200 < th dose dependent rect. 19 5
577 518.52 atmosphere 1005.0 43200 < th dose dependent rect. 23 1
612 519.04 atmosphere 1005.0 43200 < th dose dependent rect. 22 6
626 519.15 atmosphere 1005.0 43200 < th dose dependent rect. 2 1
735 520.24 wind 7.0 4320 > th dose dependent rect. 18 9
825 521.56 wind 7.0 4320 > th dose dependent rect. 18 5
842 521.78 radiation 10.0 43200 < th dose dependent rect. 8 1
850 521.88 wind 7.0 4320 < th dose independent rect. 19 1
866 522.26 wind 7.0 43200 < th dose independent rect. 19 1
903 522.89 radiation 10.0 43200 > th dose independent rect. 7 3
933 523.36 wind 7.0 4320 > th dose independent rect. 8 1
942 523.42 atmosphere 1005.0 43200 < th dose dependent no NA NA
963 523.68 atmosphere 1005.0 43200 < th dose dependent rect. 21 23
973 523.81 atmosphere 1005.0 43200 < th dose dependent rect. 19 23
983 523.95 atmosphere 1005.0 43200 < th dose dependent rect. 1 23