FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0569500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.54 (0.0595) R2 : 0.619
β1 : 2.39 (0.225) R2dD : 0.105 R2D : -0.00129
β2 : 1.43 (0.151) R2dC : 0.077 R2C : 0.0144
β3 : -4.4 (0.175) R2dE : 0.588 R2E : 0.416
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.34 (0.128) R2dN8 : 0.0081 R2N8 : 0.0279
σ : 1.11
deviance : 567.28
__
_____
C
peak time of C : 3.46
E
wheather : temperature
threshold : 25.14
memory length : 1365
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
564.84 1.12 6.57 2.11 1.4 -4.27 -0.842 -0.993 -0.393 3.56 25.04 1383 -- --
565.14 1.11 6.54 2.38 1.42 -4.37 -0.867 -- -0.339 3.53 25.09 1375 -- --
566.82 1.11 6.58 2.09 1.42 -4.28 -- -1.13 -0.415 3.48 25.13 1368 -- --
567.28 1.11 6.54 2.39 1.43 -4.4 -- -- -0.34 3.46 25.14 1365 -- --
627.92 1.17 6.57 2.18 -- -4.71 -- -0.992 -0.355 -- 25.04 1735 -- --
1341.96 1.72 6.66 0.873 0.923 -- -1.87 -- -0.859 4.16 -- -- -- --
1351.75 1.72 6.65 0.893 0.913 -- -- -- -0.848 4.23 -- -- -- --
628.36 1.17 6.54 2.43 -- -4.8 -- -- -0.286 -- 25.04 1742 -- --
706.48 1.24 6.61 -- 1.45 -3.95 -- -- -0.71 3.5 25.55 1321 -- --
1396.8 1.75 6.66 0.93 -- -- -- -- -0.824 -- -- -- -- --
1372.78 1.73 6.67 -- 0.93 -- -- -- -0.948 4.21 -- -- -- --
769.49 1.29 6.63 -- -- -4.32 -- -- -0.714 -- 25.6 1794 -- --
1419.6 1.76 6.68 -- -- -- -- -- -0.927 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 557.66 temperature 25 4320 < th dose independent rect. 7 1
2 557.89 temperature 25 4320 > th dose independent rect. 7 1
3 565.16 temperature 25 1440 > th dose dependent rect. 17 22
8 566.55 temperature 30 1440 < th dose independent rect. 10 6
11 566.93 temperature 25 1440 > th dose dependent rect. 23 22
14 567.31 temperature 25 1440 > th dose dependent rect. 12 23
18 567.51 temperature 25 1440 > th dose dependent rect. 7 22
27 567.74 temperature 25 1440 > th dose dependent no NA NA
36 567.98 temperature 25 1440 > th dose dependent rect. 20 23
86 569.50 temperature 25 1440 > th dose dependent rect. 7 15
138 572.12 temperature 30 1440 > th dose independent rect. 10 6
163 573.56 temperature 25 1440 > th dose dependent sin 22 NA
168 573.85 temperature 30 1440 < th dose independent rect. 2 14
176 574.10 temperature 30 1440 < th dose independent rect. 6 10
177 574.11 temperature 30 1440 < th dose independent rect. 22 18
178 574.12 temperature 30 1440 < th dose independent rect. 19 21
300 578.40 temperature 30 1440 < th dose independent sin 1 NA
363 580.57 temperature 30 1440 < th dose independent rect. 10 21
369 580.73 temperature 30 1440 < th dose independent rect. 10 13
373 580.74 temperature 30 1440 < th dose independent rect. 10 19
448 583.21 temperature 30 1440 > th dose independent sin 0 NA
495 584.55 temperature 25 4320 > th dose dependent rect. 7 3
505 585.07 temperature 30 1440 < th dose independent rect. 2 21
535 585.24 temperature 30 1440 < th dose independent rect. 6 17
546 585.26 temperature 30 1440 < th dose independent rect. 6 23
549 585.27 temperature 30 1440 < th dose independent no NA NA
661 587.83 temperature 30 1440 < th dose independent rect. 13 23
688 589.10 temperature 30 1440 > th dose independent no NA NA
815 591.30 temperature 25 1440 > th dose dependent rect. 18 1
818 591.49 temperature 25 1440 > th dose dependent rect. 15 6
821 591.62 temperature 30 1440 > th dose independent rect. 13 23