Os10g0568300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF828, plant family protein.
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Os10g0568300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF828, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 423.85 | 0.967 | 4.82 | -1.92 | 1.84 | -2.34 | -3.98 | 0.846 | -0.892 | 14 | 49.15 | 110 | -- | -- |
| 424.53 | 0.96 | 4.82 | -1.89 | 1.84 | -2.25 | -4.32 | -- | -0.884 | 13.9 | 51.13 | 114 | -- | -- |
| 451.41 | 0.997 | 4.85 | -2.1 | 2.02 | -1.72 | -- | 4.04 | -0.973 | 15 | 60.3 | 61 | -- | -- |
| 493.78 | 1.03 | 4.84 | -2 | 2.03 | -1.84 | -- | -- | -0.916 | 14.5 | 53.91 | 93 | -- | -- |
| 539.94 | 1.08 | 4.88 | -2.11 | -- | -3.3 | -- | 4.3 | -1.13 | -- | 63.69 | 52 | -- | -- |
| 501.03 | 1.05 | 4.81 | -1.88 | 3.17 | -- | -3.8 | -- | -0.852 | 14.5 | -- | -- | -- | -- |
| 551.3 | 1.1 | 4.83 | -1.98 | 3.18 | -- | -- | -- | -0.873 | 14.7 | -- | -- | -- | -- |
| 590.08 | 1.13 | 4.88 | -2 | -- | -3.22 | -- | -- | -1.08 | -- | 63.46 | 61 | -- | -- |
| 598.46 | 1.14 | 4.79 | -- | 2.06 | -1.78 | -- | -- | -0.702 | 14.5 | 56 | 95 | -- | -- |
| 1138.07 | 1.58 | 4.85 | -2.12 | -- | -- | -- | -- | -0.954 | -- | -- | -- | -- | -- |
| 654.86 | 1.2 | 4.78 | -- | 3.21 | -- | -- | -- | -0.652 | 14.7 | -- | -- | -- | -- |
| 695.36 | 1.23 | 4.83 | -- | -- | -3.21 | -- | -- | -0.892 | -- | 65.27 | 93 | -- | -- |
| 1256.35 | 1.65 | 4.79 | -- | -- | -- | -- | -- | -0.719 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 415.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 415.99 | humidity | 60 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 4 | 416.74 | humidity | 50 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 8 | 417.78 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 20 | 420.84 | humidity | 90 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 21 | 421.08 | humidity | 60 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 23 | 421.23 | humidity | 60 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 32 | 422.06 | humidity | 60 | 90 | > th | dose dependent | rect. | 17 | 22 |
| 35 | 422.64 | humidity | 60 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 63 | 424.51 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 88 | 425.61 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 19 |
| 147 | 427.68 | humidity | 50 | 720 | > th | dose dependent | sin | 5 | NA |
| 160 | 428.16 | humidity | 90 | 720 | < th | dose dependent | sin | 4 | NA |
| 202 | 429.36 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 220 | 429.82 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 15 |
| 228 | 430.00 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 14 |
| 243 | 430.51 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 20 |
| 311 | 432.10 | humidity | 90 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 353 | 432.91 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 367 | 433.19 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 16 |
| 370 | 433.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 376 | 433.34 | humidity | 70 | 10 | > th | dose independent | rect. | 10 | 23 |
| 424 | 433.90 | humidity | 70 | 10 | > th | dose independent | rect. | 11 | 20 |
| 427 | 433.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 430 | 433.94 | humidity | 90 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 439 | 434.10 | humidity | 80 | 720 | < th | dose independent | sin | 3 | NA |
| 453 | 434.24 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 456 | 434.28 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 22 |
| 479 | 434.53 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 23 |
| 482 | 434.55 | humidity | 90 | 90 | < th | dose dependent | no | NA | NA |
| 513 | 434.95 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 520 | 435.07 | radiation | 1 | 30 | > th | dose independent | rect. | 7 | 12 |
| 548 | 435.24 | humidity | 90 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 435.26 | humidity | 90 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 559 | 435.36 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 14 |
| 589 | 435.66 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 607 | 435.92 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 608 | 435.93 | humidity | 90 | 270 | > th | dose independent | rect. | 24 | 22 |
| 635 | 436.19 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 18 |
| 655 | 436.38 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 659 | 436.42 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 660 | 436.43 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 677 | 436.57 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 23 |
| 690 | 436.71 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 694 | 436.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 696 | 436.75 | humidity | 60 | 720 | > th | dose independent | rect. | 1 | 12 |
| 715 | 436.95 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 13 |
| 736 | 437.05 | wind | 1 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 738 | 437.06 | humidity | 50 | 270 | > th | dose dependent | sin | 9 | NA |
| 762 | 437.33 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 779 | 437.45 | humidity | 60 | 720 | > th | dose independent | rect. | 19 | 18 |
| 816 | 437.73 | humidity | 90 | 270 | < th | dose independent | rect. | 23 | 23 |
| 845 | 437.92 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 866 | 438.03 | wind | 1 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 874 | 438.09 | humidity | 90 | 270 | < th | dose independent | rect. | 11 | 23 |
| 921 | 438.49 | humidity | 80 | 720 | > th | dose independent | sin | 4 | NA |
| 927 | 438.54 | humidity | 50 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 950 | 438.73 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 23 |
| 955 | 438.82 | humidity | 50 | 90 | > th | dose dependent | sin | 1 | NA |
| 985 | 439.05 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 10 |