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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0568200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chaperonin Cpn60/TCP-1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.033) R2 : 0.321
β1 : -1.41 (0.121) R2dD : 0.21 R2D : 0.136
β2 : 0.572 (0.0851) R2dC : 0.0674 R2C : 0.0517
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.522 (0.0704) R2dN8 : 0.11 R2N8 : 0.038
σ : 0.62
deviance : 175.39
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.35 0.57 5.73 -1.68 0.579 -0.16 2.32 3.77 -0.574 16.4 0.0002953 5750 -- --
157.02 0.584 5.75 -1.56 0.541 0.53 2.24 -- -0.479 16.3 0.2144 2179 -- --
162.16 0.593 5.73 -1.67 0.589 -0.153 -- 3.79 -0.567 16.5 0.03915 5749 -- --
172.13 0.611 5.74 -1.56 0.571 0.488 -- -- -0.491 16.6 0.5 2140 -- --
181.01 0.627 5.72 -1.66 -- -0.177 -- 3.55 -0.56 -- 0.0004434 5742 -- --
161.2 0.595 5.76 -1.43 0.552 -- 2.29 -- -0.534 16.4 -- -- -- --
175.39 0.62 5.75 -1.41 0.572 -- -- -- -0.522 16.7 -- -- -- --
189.83 0.642 5.74 -1.57 -- 0.46 -- -- -0.508 -- 0.384 2142 -- --
216.48 0.685 5.73 -- 0.571 -0.701 -- -- -0.423 17 1.621 9696 -- --
192.74 0.649 5.75 -1.43 -- -- -- -- -0.537 -- -- -- -- --
227.62 0.706 5.72 -- 0.598 -- -- -- -0.365 16.6 -- -- -- --
227.02 0.702 5.74 -- -- -0.566 -- -- -0.522 -- 1.697 47520 -- --
246.65 0.733 5.71 -- -- -- -- -- -0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.35 temperature 15.0 30 > th dose dependent rect. 9 19
3 134.87 temperature 15.0 30 > th dose dependent rect. 9 17
11 137.02 temperature 20.0 30 > th dose independent rect. 9 19
50 141.33 temperature 20.0 270 > th dose independent rect. 6 20
60 141.78 temperature 20.0 270 > th dose independent rect. 7 18
66 141.93 atmosphere 1010.0 30 < th dose independent rect. 9 19
93 142.83 temperature 20.0 30 > th dose independent rect. 21 7
97 143.01 wind 1.0 43200 > th dose dependent rect. 24 3
106 143.35 wind 9.0 43200 < th dose dependent rect. 24 3
111 143.49 humidity 80.0 720 > th dose dependent rect. 19 2
113 143.51 humidity 60.0 720 > th dose dependent rect. 18 7
116 143.57 humidity 90.0 720 < th dose dependent rect. 19 4
117 143.58 wind 3.0 43200 < th dose independent rect. 23 5
123 143.67 humidity 80.0 720 > th dose dependent rect. 19 4
132 143.84 wind 3.0 14400 < th dose independent rect. 2 1
139 143.90 atmosphere 1015.0 30 < th dose dependent rect. 9 19
146 144.02 wind 3.0 14400 > th dose independent rect. 2 1
150 144.05 humidity 90.0 720 < th dose independent rect. 21 2
153 144.09 radiation 1.0 4320 > th dose independent rect. 9 1
164 144.20 wind 1.0 43200 > th dose dependent rect. 23 5
167 144.23 wind 5.0 43200 < th dose dependent rect. 23 5
170 144.25 wind 3.0 43200 < th dose independent rect. 24 3
174 144.29 humidity 90.0 720 < th dose dependent rect. 18 12
178 144.32 wind 3.0 43200 > th dose independent rect. 23 5
183 144.40 humidity 90.0 720 < th dose dependent rect. 18 9
222 144.84 atmosphere 995.0 10 > th dose dependent rect. 11 23
225 144.86 humidity 90.0 720 > th dose independent rect. 19 5
235 144.97 radiation 20.0 14400 < th dose independent rect. 5 1
246 145.07 humidity 90.0 720 < th dose independent rect. 20 4
265 145.17 humidity 60.0 14400 > th dose independent rect. 3 5
271 145.24 wind 1.0 14400 > th dose dependent rect. 2 1
350 145.80 atmosphere 1010.0 90 < th dose independent rect. 5 23
381 146.01 atmosphere 1010.0 10 < th dose independent rect. 9 23
400 146.15 radiation 1.0 1440 < th dose independent rect. 8 7
402 146.15 radiation 1.0 1440 < th dose dependent rect. 8 7
417 146.23 atmosphere 995.0 10 > th dose dependent rect. 4 23
421 146.25 radiation 1.0 1440 < th dose independent rect. 9 4
422 146.25 radiation 1.0 1440 < th dose dependent rect. 9 4
430 146.30 radiation 1.0 4320 < th dose independent rect. 9 1
431 146.30 radiation 1.0 4320 < th dose dependent rect. 9 1
440 146.36 precipitation 0.1 14400 < th dose independent rect. 19 1
441 146.36 precipitation 0.1 14400 < th dose dependent rect. 19 1
448 146.37 temperature 15.0 14400 < th dose dependent rect. 13 11
454 146.40 humidity 70.0 14400 < th dose dependent rect. 21 1
464 146.40 temperature 30.0 30 < th dose dependent rect. 4 20
466 146.41 temperature 15.0 14400 < th dose dependent sin 19 NA
468 146.42 precipitation 0.1 14400 > th dose independent rect. 19 1
486 146.47 temperature 15.0 14400 < th dose independent rect. 9 9
488 146.48 temperature 15.0 14400 < th dose dependent rect. 19 4
492 146.49 precipitation 0.1 270 > th dose independent rect. 20 8
502 146.52 temperature 15.0 14400 < th dose dependent rect. 4 19
524 146.57 temperature 15.0 14400 < th dose independent rect. 20 3
530 146.58 temperature 15.0 14400 < th dose independent rect. 21 1
538 146.58 temperature 15.0 14400 < th dose dependent rect. 4 16
555 146.62 temperature 15.0 14400 < th dose independent rect. 11 5
559 146.63 temperature 15.0 14400 < th dose dependent sin 0 NA
565 146.65 temperature 15.0 14400 < th dose independent rect. 12 1
571 146.66 temperature 15.0 14400 < th dose independent rect. 9 14
588 146.71 temperature 15.0 14400 > th dose independent rect. 21 1
589 146.71 radiation 20.0 4320 < th dose independent rect. 3 3
593 146.72 temperature 15.0 14400 > th dose independent rect. 9 10
610 146.77 atmosphere 1010.0 90 < th dose independent rect. 21 14
624 146.80 humidity 50.0 14400 < th dose dependent rect. 9 1
635 146.83 humidity 80.0 720 > th dose independent rect. 18 14
640 146.84 temperature 15.0 14400 > th dose independent rect. 9 14
687 146.97 temperature 15.0 14400 < th dose dependent rect. 10 4
696 146.99 wind 7.0 14400 > th dose independent rect. 11 2
727 147.07 atmosphere 1015.0 1440 < th dose independent rect. 3 7
752 147.12 wind 7.0 14400 < th dose independent rect. 11 2
778 147.16 humidity 70.0 14400 > th dose independent rect. 21 1
781 147.16 radiation 1.0 1440 > th dose independent rect. 8 7
787 147.17 humidity 80.0 1440 > th dose independent rect. 5 3
798 147.19 atmosphere 1015.0 10 < th dose dependent sin 8 NA
800 147.19 temperature 15.0 14400 < th dose dependent rect. 21 1
808 147.20 temperature 20.0 30 > th dose dependent rect. 4 5
816 147.22 wind 7.0 14400 > th dose dependent rect. 5 8
835 147.25 temperature 15.0 14400 < th dose dependent rect. 5 4
846 147.28 temperature 15.0 14400 < th dose independent sin 21 NA
848 147.28 temperature 15.0 14400 > th dose independent rect. 11 5
858 147.29 precipitation 0.1 4320 > th dose independent rect. 19 21
892 147.31 temperature 20.0 720 < th dose dependent rect. 6 18
895 147.32 atmosphere 1000.0 30 > th dose dependent sin 8 NA
896 147.32 temperature 25.0 1440 < th dose dependent rect. 10 1
897 147.32 precipitation 0.1 14400 > th dose dependent rect. 19 1
901 147.33 precipitation 0.1 4320 < th dose independent rect. 19 21
904 147.33 precipitation 0.1 4320 < th dose dependent rect. 19 21
910 147.34 atmosphere 1005.0 90 > th dose dependent rect. 23 10
919 147.35 wind 7.0 14400 > th dose dependent rect. 11 2
933 147.37 humidity 80.0 43200 > th dose independent rect. 24 18