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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0568100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF828, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0322) R2 : 0.264
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.05 (0.0825) R2dC : 0.262 R2C : 0.259
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0678) R2dN8 : 0.00494 R2N8 : 0.00115
σ : 0.607
deviance : 168.59
__
_____
C
peak time of C : 19.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.22 0.589 3.85 0.241 1.18 0.546 0.105 0.44 0.0958 21.1 20.41 125 -- --
157.71 0.585 3.85 0.233 1.17 0.548 -0.112 -- 0.0923 21.1 20.32 125 -- --
157.16 0.584 3.84 0.247 1.15 0.536 -- 0.435 0.0961 21.1 20.4 140 -- --
157.75 0.585 3.85 0.239 1.17 0.549 -- -- 0.091 21.1 20.32 125 -- --
185.98 0.635 3.81 0.398 -- 0.768 -- 0.854 -0.0313 -- 11.18 875 -- --
166.04 0.604 3.83 0.311 1.05 -- 0.015 -- 0.139 19.8 -- -- -- --
166.04 0.603 3.83 0.311 1.05 -- -- -- 0.139 19.8 -- -- -- --
169.79 0.607 3.82 0.281 -- 1.41 -- -- 0.0644 -- 4.65 913 -- --
159.26 0.588 3.85 -- 1.16 0.566 -- -- 0.0724 21.1 20.32 125 -- --
225.9 0.702 3.81 0.299 -- -- -- -- 0.125 -- -- -- -- --
168.59 0.607 3.84 -- 1.05 -- -- -- 0.104 19.9 -- -- -- --
171.41 0.61 3.83 -- -- 1.46 -- -- 0.0359 -- 3.84 919 -- --
228.25 0.705 3.82 -- -- -- -- -- 0.0914 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.14 temperature 15.0 90 > th dose dependent rect. 9 18
6 151.20 radiation 1.0 4320 < th dose dependent rect. 3 1
8 151.63 temperature 25.0 90 > th dose dependent rect. 1 1
10 151.87 temperature 25.0 90 > th dose independent rect. 1 1
11 151.88 precipitation 0.1 30 < th dose independent rect. 3 23
12 151.88 precipitation 0.1 30 < th dose dependent rect. 3 23
20 152.09 temperature 20.0 10 > th dose independent rect. 2 1
22 152.11 wind 9.0 1440 < th dose independent rect. 3 1
23 152.11 temperature 10.0 1440 > th dose independent rect. 3 1
26 152.11 temperature 30.0 1440 < th dose independent rect. 3 1
30 152.11 humidity 50.0 1440 > th dose independent rect. 3 1
39 152.11 atmosphere 995.0 1440 > th dose independent rect. 3 1
40 152.11 radiation 1.0 1440 < th dose independent rect. 3 1
60 152.11 temperature 10.0 1440 > th dose independent rect. 4 23
68 152.11 radiation 20.0 43200 < th dose dependent rect. 3 1
76 152.16 atmosphere 1010.0 30 < th dose dependent rect. 2 1
77 152.18 humidity 80.0 10 > th dose independent rect. 2 1
82 152.28 atmosphere 995.0 30 > th dose independent rect. 3 23
83 152.30 humidity 80.0 30 > th dose dependent rect. 2 1
86 152.33 radiation 30.0 270 < th dose dependent rect. 3 9
91 152.43 wind 1.0 30 < th dose independent rect. 2 1
93 152.44 temperature 15.0 30 > th dose dependent rect. 2 1
101 152.53 wind 9.0 30 < th dose independent rect. 2 1
102 152.53 temperature 10.0 30 > th dose independent rect. 2 1
104 152.53 temperature 30.0 30 < th dose independent rect. 2 1
105 152.53 humidity 50.0 30 > th dose independent rect. 2 1
108 152.53 atmosphere 995.0 30 > th dose independent rect. 2 1
109 152.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
111 152.53 radiation 1.0 30 < th dose independent rect. 2 1
116 152.53 precipitation 0.1 30 < th dose independent rect. 2 1
117 152.53 temperature 10.0 30 > th dose independent rect. 3 23
119 152.53 radiation 1.0 30 < th dose dependent rect. 2 1
124 152.53 precipitation 0.1 30 < th dose dependent rect. 2 1
128 152.56 wind 3.0 30 < th dose dependent rect. 2 1
132 152.59 wind 9.0 30 < th dose dependent rect. 2 1
135 152.63 wind 5.0 30 < th dose independent rect. 2 1
137 152.63 atmosphere 995.0 30 > th dose dependent rect. 2 1
153 152.77 temperature 30.0 30 < th dose dependent rect. 2 1
156 152.82 wind 1.0 30 > th dose independent rect. 2 1
196 153.12 radiation 30.0 90 < th dose independent rect. 3 10
209 153.33 humidity 50.0 30 > th dose dependent rect. 3 23
214 153.49 temperature 15.0 10 > th dose dependent rect. 9 13
220 153.56 radiation 20.0 270 < th dose independent rect. 3 8
237 153.90 temperature 25.0 270 > th dose independent rect. 23 4
242 154.08 temperature 20.0 270 > th dose independent rect. 20 7
246 154.15 radiation 30.0 90 < th dose independent rect. 3 22
248 154.18 radiation 40.0 30 < th dose dependent rect. 3 23
250 154.23 temperature 15.0 270 > th dose dependent rect. 20 7
254 154.32 wind 1.0 14400 > th dose dependent rect. 22 6
255 154.33 temperature 25.0 270 > th dose dependent rect. 23 4
258 154.37 temperature 30.0 30 < th dose dependent rect. 3 23
260 154.38 humidity 70.0 90 > th dose independent rect. 3 9
268 154.42 temperature 15.0 270 > th dose dependent rect. 22 5
281 154.54 wind 3.0 14400 > th dose independent rect. 23 2
282 154.54 wind 3.0 14400 > th dose independent rect. 22 6
286 154.55 wind 3.0 14400 < th dose independent rect. 23 2
287 154.55 wind 9.0 14400 < th dose dependent rect. 23 5
306 154.65 wind 3.0 14400 < th dose independent rect. 22 6
322 154.72 temperature 25.0 30 > th dose independent rect. 9 7
355 154.86 wind 9.0 14400 < th dose dependent rect. 24 3
382 154.95 humidity 60.0 270 > th dose dependent rect. 3 8
403 155.05 temperature 30.0 90 < th dose dependent rect. 3 20
414 155.09 temperature 25.0 10 > th dose independent rect. 9 13
416 155.09 wind 5.0 14400 < th dose dependent rect. 24 1
425 155.11 temperature 10.0 270 > th dose dependent rect. 17 10
485 155.32 humidity 90.0 270 < th dose independent rect. 7 20
499 155.37 radiation 40.0 90 < th dose dependent rect. 5 7
505 155.40 humidity 90.0 270 < th dose independent rect. 23 3
507 155.40 wind 9.0 30 < th dose independent rect. 3 23
508 155.40 humidity 50.0 10 > th dose independent rect. 3 23
521 155.44 humidity 70.0 10 > th dose independent rect. 3 23
539 155.50 radiation 20.0 90 > th dose independent rect. 8 7
717 155.96 wind 1.0 1440 < th dose independent rect. 12 1
725 155.97 temperature 25.0 90 > th dose independent rect. 9 18
780 156.10 atmosphere 1015.0 30 < th dose independent rect. 3 23
849 156.24 temperature 25.0 10 < th dose dependent sin 21 NA
852 156.25 wind 1.0 1440 < th dose dependent rect. 12 1
879 156.27 humidity 80.0 90 < th dose independent rect. 20 20
909 156.31 radiation 40.0 90 < th dose independent rect. 5 15
910 156.31 temperature 15.0 270 > th dose independent rect. 10 17
925 156.33 temperature 30.0 90 < th dose dependent rect. 3 16
926 156.34 precipitation 0.1 4320 < th dose independent rect. 7 2
930 156.34 precipitation 0.1 4320 < th dose dependent rect. 7 2
997 156.43 humidity 80.0 90 < th dose dependent sin 8 NA
1000 156.44 radiation 30.0 90 < th dose independent rect. 3 14