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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0567900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HAT dimerisation domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0402) R2 : 0.538
β1 : 0.912 (0.156) R2dD : 0.0365 R2D : 0.057
β2 : 1.93 (0.103) R2dC : 0.359 R2C : 0.307
β3 : -1.54 (0.162) R2dE : 0.11 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.444 (0.0886) R2dN8 : 0.0377 R2N8 : 0.0454
σ : 0.745
deviance : 256.04
__
_____
C
peak time of C : 4.04
E
wheather : temperature
threshold : 19.4
memory length : 345
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.47 0.752 4.66 0.893 1.9 -1.39 0.359 0.103 0.449 4.04 19.8 348 -- --
256.14 0.745 4.65 0.906 1.89 -1.43 0.362 -- 0.451 4.05 19.7 349 -- --
256.4 0.746 4.66 0.875 1.91 -1.43 -- 0.114 0.447 4.07 19.67 349 -- --
256.04 0.745 4.67 0.912 1.93 -1.54 -- -- 0.444 4.04 19.4 345 -- --
422.52 0.957 4.7 0.759 -- -1.43 -- 0.442 0.401 -- 20 1073 -- --
305.94 0.82 4.6 1.38 1.74 -- 0.517 -- 0.692 3.94 -- -- -- --
306.68 0.82 4.6 1.37 1.74 -- -- -- 0.689 3.99 -- -- -- --
423.06 0.958 4.68 0.848 -- -1.49 -- -- 0.442 -- 19.8 1079 -- --
273.02 0.77 4.68 -- 1.93 -1.85 -- -- 0.354 4.02 19.2 350 -- --
472.78 1.02 4.61 1.44 -- -- -- -- 0.735 -- -- -- -- --
356.41 0.883 4.64 -- 1.77 -- -- -- 0.536 3.97 -- -- -- --
431.75 0.968 4.72 -- -- -2.03 -- -- 0.269 -- 19 2523 -- --
527.85 1.07 4.65 -- -- -- -- -- 0.575 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.64 precipitation 0.1 43200 < th dose independent rect. 7 9
2 238.64 precipitation 0.1 43200 < th dose dependent rect. 7 9
3 238.93 precipitation 0.1 43200 > th dose independent rect. 7 9
10 241.93 precipitation 0.1 43200 > th dose dependent rect. 6 10
11 242.28 wind 1.0 43200 > th dose independent rect. 4 2
27 243.43 humidity 90.0 43200 > th dose dependent rect. 13 4
37 243.99 humidity 80.0 43200 > th dose dependent rect. 11 4
51 244.65 humidity 90.0 43200 > th dose dependent rect. 15 1
73 246.11 temperature 25.0 43200 < th dose independent rect. 10 1
80 246.42 temperature 25.0 43200 > th dose independent rect. 10 3
82 246.46 temperature 25.0 43200 > th dose independent rect. 10 1
91 246.76 wind 1.0 43200 < th dose independent rect. 4 3
96 246.91 radiation 20.0 14400 > th dose independent rect. 6 2
109 246.92 temperature 25.0 43200 > th dose independent rect. 12 1
119 247.10 wind 1.0 43200 > th dose independent rect. 2 5
120 247.16 temperature 20.0 270 > th dose independent rect. 18 14
133 247.49 temperature 20.0 720 > th dose independent rect. 18 7
146 247.93 wind 9.0 43200 < th dose dependent rect. 4 2
149 248.05 wind 7.0 14400 < th dose dependent rect. 14 1
150 248.06 humidity 90.0 43200 > th dose independent rect. 13 1
169 248.57 wind 1.0 43200 < th dose dependent rect. 4 2
174 248.63 humidity 70.0 43200 > th dose independent rect. 17 16
178 248.70 humidity 90.0 43200 > th dose independent rect. 9 8
180 248.71 humidity 70.0 43200 > th dose independent rect. 18 2
191 248.95 humidity 70.0 43200 < th dose independent rect. 17 16
195 249.02 temperature 20.0 14400 > th dose dependent rect. 13 2
206 249.14 humidity 70.0 43200 > th dose independent rect. 18 14
208 249.18 wind 5.0 14400 < th dose independent rect. 14 1
210 249.21 wind 1.0 14400 > th dose dependent rect. 14 1
216 249.28 humidity 70.0 43200 > th dose independent rect. 17 8
218 249.28 temperature 20.0 14400 > th dose dependent rect. 6 10
222 249.31 wind 1.0 43200 > th dose dependent rect. 4 2
242 249.45 temperature 20.0 720 > th dose independent rect. 18 11
252 249.54 humidity 70.0 43200 < th dose independent rect. 17 9
273 249.68 wind 5.0 14400 > th dose independent rect. 14 1
287 249.76 radiation 20.0 43200 > th dose independent rect. 13 1
304 249.88 precipitation 0.1 14400 > th dose independent rect. 14 1
305 249.88 precipitation 0.1 14400 > th dose dependent rect. 14 1
309 249.89 humidity 70.0 43200 < th dose independent rect. 17 18
327 250.03 temperature 20.0 14400 > th dose dependent sin 1 NA
338 250.10 humidity 80.0 43200 > th dose dependent rect. 10 1
357 250.20 humidity 90.0 43200 < th dose independent rect. 9 6
363 250.22 humidity 90.0 43200 < th dose dependent rect. 10 2
382 250.35 humidity 90.0 43200 > th dose independent rect. 12 5
417 250.50 radiation 20.0 1440 < th dose independent rect. 11 1
431 250.57 wind 1.0 43200 < th dose independent rect. 2 5
436 250.58 wind 9.0 43200 < th dose dependent rect. 1 5
522 250.95 wind 1.0 43200 > th dose dependent rect. 1 5
526 250.98 precipitation 0.1 43200 < th dose independent rect. 14 2
527 250.98 precipitation 0.1 43200 < th dose dependent rect. 14 2
575 251.19 humidity 70.0 43200 < th dose independent rect. 18 2
599 251.30 humidity 90.0 43200 > th dose independent rect. 16 1
601 251.30 wind 3.0 14400 > th dose independent rect. 9 6
610 251.32 wind 1.0 43200 < th dose dependent rect. 2 5
693 251.61 temperature 20.0 14400 > th dose dependent no NA NA
723 251.74 precipitation 0.1 43200 > th dose independent rect. 7 3
731 251.77 wind 3.0 14400 > th dose independent rect. 12 3
748 251.82 wind 1.0 14400 < th dose dependent rect. 24 2
755 251.86 humidity 80.0 43200 > th dose independent rect. 11 3
758 251.87 precipitation 0.1 43200 > th dose dependent rect. 7 3
780 251.97 radiation 20.0 43200 < th dose dependent rect. 13 1
793 252.00 humidity 80.0 43200 > th dose independent rect. 11 1
803 252.02 wind 5.0 43200 > th dose independent rect. 8 1
814 252.04 precipitation 0.1 43200 < th dose independent rect. 7 3
815 252.04 precipitation 0.1 43200 < th dose dependent rect. 7 3
822 252.08 wind 1.0 43200 > th dose independent rect. 14 1
855 252.23 humidity 70.0 43200 < th dose independent sin 10 NA
895 252.36 radiation 1.0 14400 > th dose independent rect. 18 11
921 252.45 wind 5.0 43200 < th dose independent rect. 8 1
941 252.52 humidity 90.0 43200 > th dose independent rect. 9 1
979 252.67 wind 9.0 43200 > th dose dependent rect. 18 1
986 252.68 humidity 90.0 14400 > th dose dependent rect. 12 17