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Os10g0567500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Intron maturase, type II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.03 (0.0302) R2 : 0.728
β1 : 2.2 (0.11) R2dD : 0.246 R2D : 0.176
β2 : 1.55 (0.0733) R2dC : 0.277 R2C : 0.334
β3 : -1.79 (0.109) R2dE : 0.181 R2E : 0.203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.53 (0.0662) R2dN8 : 0.0536 R2N8 : -0.0448
σ : 0.561
deviance : 145
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_____
C
peak time of C : 13.5
E
wheather : atmosphere
threshold : 1003
memory length : 81
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.13
open length of G : 5.31

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.35 0.555 8.03 2.27 1.55 -1.78 0.01 2.08 0.548 13.5 1003 79 3.02 5.35
144.89 0.561 8.03 2.22 1.55 -1.79 -0.221 -- 0.538 13.5 1003 81 3.12 5.33
139.34 0.55 8.03 2.27 1.55 -1.78 -- 2.07 0.545 13.5 1003 78 3.03 5.36
145 0.561 8.03 2.2 1.55 -1.79 -- -- 0.53 13.5 1003 81 3.13 5.31
268.51 0.763 8.01 2.37 -- -2.23 -- 2.23 0.604 -- 1001 16 2.9 5.95
197.69 0.659 8.11 2.1 1.99 -- -0.0915 -- 0.262 15 -- -- -- --
197.72 0.658 8.11 2.1 1.99 -- -- -- 0.261 15 -- -- -- --
271.71 0.768 8.04 2.32 -- -2.05 -- -- 0.538 -- 1001 12 2.94 5.93
270.48 0.766 8.08 -- 1.5 -1.57 -- -- 0.309 13.3 1001 88 3.15 5.42
425.45 0.964 8.12 2.01 -- -- -- -- 0.209 -- -- -- -- --
313.6 0.828 8.16 -- 1.95 -- -- -- 0.0275 15 -- -- -- --
391.88 0.922 8.08 -- -- -1.72 -- -- 0.271 -- 998.1 8 2.95 5.97
532.21 1.08 8.17 -- -- -- -- -- -0.0141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.96 atmosphere 1000.0 90 > th dose dependent rect. 3 5
2 146.09 atmosphere 1000.0 10 > th dose dependent rect. 3 6
8 149.47 wind 5.0 90 < th dose independent rect. 3 5
11 150.35 atmosphere 1005.0 90 > th dose independent rect. 3 5
12 150.47 atmosphere 1000.0 270 > th dose dependent rect. 3 2
13 150.51 wind 5.0 270 < th dose independent rect. 3 2
22 151.33 precipitation 0.1 90 < th dose independent rect. 3 5
23 151.33 precipitation 0.1 90 < th dose dependent rect. 3 5
28 152.00 atmosphere 1005.0 10 > th dose independent rect. 4 5
29 152.05 precipitation 0.1 270 < th dose independent rect. 3 2
31 152.05 precipitation 0.1 270 < th dose dependent rect. 3 2
35 152.19 wind 9.0 90 < th dose independent rect. 8 19
36 152.23 atmosphere 1005.0 270 > th dose independent rect. 3 3
43 152.64 temperature 10.0 90 > th dose independent rect. 3 5
45 152.64 temperature 30.0 90 < th dose independent rect. 3 5
46 152.64 humidity 50.0 90 > th dose independent rect. 3 5
48 152.64 atmosphere 995.0 90 > th dose independent rect. 3 5
49 152.64 atmosphere 1015.0 90 < th dose independent rect. 3 5
50 152.64 temperature 10.0 90 > th dose independent rect. 8 19
54 152.86 precipitation 0.1 10 < th dose independent rect. 3 6
55 152.86 precipitation 0.1 10 < th dose dependent rect. 3 6
59 153.10 precipitation 0.1 90 < th dose independent rect. 8 19
60 153.10 precipitation 0.1 90 < th dose dependent rect. 8 19
62 153.23 radiation 40.0 90 < th dose independent rect. 3 5
76 153.69 wind 1.0 270 > th dose independent rect. 3 2
77 153.77 wind 9.0 90 < th dose dependent rect. 3 5
79 153.80 wind 9.0 270 < th dose independent rect. 5 22
84 154.19 radiation 1.0 270 < th dose dependent rect. 3 2
86 154.21 temperature 10.0 270 > th dose independent rect. 3 2
88 154.21 temperature 30.0 270 < th dose independent rect. 3 2
89 154.21 humidity 50.0 270 > th dose independent rect. 3 2
92 154.21 atmosphere 995.0 270 > th dose independent rect. 3 2
93 154.21 atmosphere 1010.0 270 < th dose independent rect. 3 2
95 154.21 radiation 20.0 270 < th dose independent rect. 3 2
98 154.21 temperature 10.0 270 > th dose independent rect. 5 22
102 154.28 radiation 40.0 270 < th dose dependent rect. 3 2
108 154.39 wind 9.0 10 < th dose independent rect. 9 19
112 154.54 radiation 1.0 270 < th dose independent rect. 3 2
121 154.56 wind 5.0 270 < th dose independent rect. 1 6
130 154.88 temperature 10.0 10 > th dose independent rect. 4 5
132 154.88 temperature 30.0 10 < th dose independent rect. 4 5
133 154.88 humidity 50.0 10 > th dose independent rect. 4 5
135 154.88 atmosphere 995.0 10 > th dose independent rect. 4 5
136 154.88 atmosphere 1015.0 10 < th dose independent rect. 4 5
137 154.88 temperature 10.0 10 > th dose independent rect. 9 19
138 154.94 atmosphere 995.0 90 > th dose independent rect. 8 19
152 155.13 precipitation 0.1 10 < th dose independent rect. 9 18
153 155.13 precipitation 0.1 10 < th dose dependent rect. 9 18
171 155.40 wind 9.0 10 < th dose dependent rect. 4 5
193 156.02 wind 1.0 270 > th dose independent rect. 1 6
209 156.31 wind 1.0 270 > th dose independent rect. 2 4
210 156.33 wind 9.0 270 < th dose dependent rect. 3 2
220 156.65 atmosphere 995.0 10 > th dose independent rect. 9 19
223 156.75 humidity 90.0 10 < th dose independent rect. 3 6
224 156.76 temperature 30.0 270 < th dose dependent rect. 3 2
245 157.21 precipitation 0.1 270 < th dose independent rect. 5 22
246 157.21 temperature 10.0 90 > th dose dependent rect. 3 5
247 157.21 precipitation 0.1 270 < th dose dependent rect. 5 22
255 157.51 precipitation 0.1 270 < th dose independent rect. 1 6
256 157.51 precipitation 0.1 270 < th dose dependent rect. 1 6
290 158.02 temperature 10.0 10 > th dose dependent rect. 3 6
294 158.13 temperature 10.0 1440 > th dose independent rect. 4 6
298 158.13 atmosphere 995.0 1440 > th dose independent rect. 4 6
299 158.13 atmosphere 1015.0 1440 < th dose independent rect. 4 6
300 158.13 temperature 10.0 1440 > th dose independent rect. 10 18
303 158.13 humidity 50.0 90 > th dose independent rect. 8 19
313 158.36 wind 9.0 90 < th dose dependent rect. 8 19
325 158.60 humidity 50.0 270 > th dose dependent rect. 3 2
349 158.92 temperature 10.0 270 > th dose independent rect. 1 6
351 158.92 temperature 30.0 270 < th dose independent rect. 1 6
352 158.92 humidity 50.0 270 > th dose independent rect. 1 6
354 158.92 atmosphere 995.0 270 > th dose independent rect. 1 6
355 158.92 atmosphere 1015.0 270 < th dose independent rect. 1 6
356 158.92 radiation 40.0 270 < th dose independent rect. 1 6
359 158.94 radiation 40.0 270 < th dose dependent rect. 2 5
413 159.98 atmosphere 995.0 270 > th dose independent rect. 6 21
448 160.43 wind 7.0 270 < th dose independent rect. 9 1
460 160.51 wind 9.0 270 < th dose dependent rect. 9 1
471 160.75 radiation 1.0 270 > th dose independent rect. 9 1
474 160.78 wind 1.0 90 > th dose independent rect. 8 19
477 160.79 temperature 10.0 270 > th dose dependent rect. 3 2
489 160.84 precipitation 0.1 10 < th dose independent rect. 14 19
490 160.84 precipitation 0.1 10 < th dose dependent rect. 14 19
494 160.93 temperature 15.0 270 > th dose independent rect. 9 1
504 160.93 temperature 15.0 10 > th dose independent rect. 14 19
521 161.06 humidity 50.0 270 > th dose independent rect. 9 1
537 161.17 precipitation 0.1 270 < th dose independent rect. 9 1
538 161.17 precipitation 0.1 270 < th dose dependent rect. 9 1
542 161.20 atmosphere 1015.0 10 < th dose independent rect. 14 19
553 161.30 atmosphere 995.0 270 > th dose independent rect. 9 1
554 161.30 atmosphere 1015.0 270 < th dose independent rect. 9 1
555 161.30 temperature 10.0 270 > th dose independent rect. 10 23
558 161.32 wind 9.0 270 < th dose dependent rect. 7 6
564 161.40 radiation 40.0 90 < th dose independent rect. 13 19
570 161.54 temperature 15.0 90 > th dose independent rect. 15 17
581 161.60 temperature 30.0 90 < th dose dependent rect. 3 5
588 161.72 precipitation 0.1 270 < th dose independent rect. 10 22
589 161.72 precipitation 0.1 270 < th dose dependent rect. 10 22
610 161.81 atmosphere 1015.0 90 < th dose independent rect. 8 19
617 161.88 precipitation 0.1 90 < th dose independent rect. 8 7
618 161.88 precipitation 0.1 90 < th dose dependent rect. 8 7
621 161.90 temperature 10.0 10 > th dose independent rect. 9 5
624 161.90 atmosphere 995.0 10 > th dose independent rect. 9 5
625 161.90 atmosphere 1015.0 10 < th dose independent rect. 9 5
626 161.90 precipitation 0.1 10 < th dose independent rect. 9 5
628 161.90 precipitation 0.1 10 < th dose dependent rect. 9 5
629 161.92 radiation 1.0 10 > th dose independent rect. 9 5
630 161.93 wind 9.0 10 < th dose independent rect. 9 5
650 162.08 temperature 10.0 90 > th dose independent rect. 8 7
651 162.08 atmosphere 1015.0 90 < th dose independent rect. 8 7
662 162.19 atmosphere 1015.0 90 < th dose independent rect. 15 17
673 162.28 atmosphere 1015.0 270 < th dose independent rect. 11 10
674 162.31 atmosphere 995.0 90 > th dose independent rect. 8 7
680 162.34 wind 9.0 90 < th dose independent rect. 8 7
691 162.42 precipitation 0.1 90 < th dose independent rect. 15 17
693 162.42 precipitation 0.1 90 < th dose dependent rect. 15 17
701 162.48 radiation 40.0 90 < th dose independent rect. 15 17
727 162.65 precipitation 0.1 270 < th dose independent rect. 13 17
728 162.65 precipitation 0.1 270 < th dose dependent rect. 13 17
729 162.67 precipitation 0.1 270 < th dose independent rect. 2 15
732 162.67 precipitation 0.1 270 < th dose dependent rect. 2 15
742 162.74 wind 9.0 10 < th dose independent rect. 14 19
770 162.88 humidity 50.0 270 > th dose independent rect. 21 14
775 162.89 humidity 50.0 270 > th dose dependent rect. 18 8
776 162.90 wind 1.0 270 > th dose independent rect. 9 1
779 162.90 precipitation 0.1 270 < th dose independent rect. 11 20
780 162.90 precipitation 0.1 270 < th dose dependent rect. 11 20
785 162.96 wind 9.0 90 < th dose independent rect. 15 17
800 163.00 temperature 10.0 1440 > th dose independent rect. 10 5
804 163.00 temperature 10.0 1440 > th dose independent rect. 15 19
826 163.15 temperature 10.0 270 > th dose independent rect. 11 10
827 163.15 temperature 10.0 270 > th dose independent rect. 21 14
828 163.15 atmosphere 995.0 270 > th dose independent rect. 21 14
833 163.18 wind 9.0 270 < th dose independent rect. 21 14
836 163.21 atmosphere 995.0 30 > th dose dependent rect. 9 18
838 163.23 atmosphere 995.0 10 > th dose independent rect. 14 19
840 163.24 temperature 15.0 270 > th dose independent rect. 7 4
882 163.38 wind 7.0 270 < th dose independent rect. 7 4
883 163.38 humidity 50.0 90 > th dose dependent rect. 3 6
889 163.42 temperature 15.0 270 > th dose independent rect. 6 7
893 163.45 wind 9.0 1440 < th dose independent rect. 4 5
900 163.45 humidity 50.0 1440 > th dose independent rect. 4 5
914 163.46 wind 9.0 270 < th dose independent rect. 6 7
925 163.52 humidity 50.0 270 > th dose independent rect. 7 4
930 163.54 atmosphere 995.0 90 > th dose independent rect. 15 17
935 163.56 precipitation 0.1 270 < th dose independent rect. 6 7
936 163.56 precipitation 0.1 270 < th dose dependent rect. 6 7
939 163.57 humidity 50.0 270 > th dose independent rect. 6 7
940 163.57 atmosphere 995.0 270 > th dose independent rect. 6 7
941 163.57 atmosphere 1015.0 270 < th dose independent rect. 6 7
945 163.60 wind 1.0 30 > th dose independent rect. 9 5
947 163.60 wind 1.0 270 > th dose independent rect. 12 19
976 163.76 temperature 10.0 270 > th dose dependent rect. 9 1
983 163.80 wind 1.0 90 > th dose independent rect. 8 7
986 163.81 precipitation 0.1 270 < th dose independent rect. 7 4
987 163.81 precipitation 0.1 270 < th dose dependent rect. 7 4
992 163.84 atmosphere 995.0 270 > th dose independent rect. 7 4
993 163.84 atmosphere 1015.0 270 < th dose independent rect. 7 4