Os10g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os10g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 248.61 | 0.741 | 3.15 | -1.27 | 0.257 | -0.512 | -1.87 | 3.13 | -0.627 | 2.08 | 19.99 | 1441 | -- | -- |
| 271.72 | 0.768 | 3.16 | -1.09 | 0.252 | -0.5 | -1.92 | -- | -0.605 | 1.98 | 19.5 | 1406 | -- | -- |
| 261.49 | 0.753 | 3.15 | -1.23 | 0.258 | -0.487 | -- | 3.22 | -0.622 | 1.83 | 19.99 | 1437 | -- | -- |
| 286.42 | 0.788 | 3.14 | -0.998 | 0.261 | -0.447 | -- | -- | -0.592 | 1.71 | 19.13 | 1375 | -- | -- |
| 256.54 | 0.746 | 3.16 | -1.23 | -- | -0.581 | -- | 3.67 | -0.624 | -- | 20 | 1274 | -- | -- |
| 279.16 | 0.783 | 3.11 | -0.986 | 0.252 | -- | -1.89 | -- | -0.434 | 2.05 | -- | -- | -- | -- |
| 292.7 | 0.801 | 3.11 | -0.929 | 0.249 | -- | -- | -- | -0.422 | 1.44 | -- | -- | -- | -- |
| 287.18 | 0.789 | 3.14 | -0.971 | -- | -0.504 | -- | -- | -0.542 | -- | 19.12 | 1217 | -- | -- |
| 303.17 | 0.811 | 3.16 | -- | 0.243 | -0.749 | -- | -- | -0.431 | 1.62 | 20 | 4205 | -- | -- |
| 296.52 | 0.805 | 3.1 | -0.919 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 315.46 | 0.831 | 3.08 | -- | 0.233 | -- | -- | -- | -0.319 | 1.31 | -- | -- | -- | -- |
| 304.26 | 0.812 | 3.13 | -- | -- | -0.819 | -- | -- | -0.474 | -- | 19.84 | 4182 | -- | -- |
| 318.81 | 0.833 | 3.08 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.71 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 244.68 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 10 | 245.47 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 21 | 246.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 22 | 246.45 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 26 | 246.63 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 28 | 246.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 35 | 247.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 37 | 247.13 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 46 | 247.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 49 | 247.77 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 50 | 247.78 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 52 | 247.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 53 | 248.02 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 55 | 248.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 58 | 248.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 59 | 248.13 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 60 | 248.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 61 | 248.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 65 | 248.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 75 | 248.24 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 93 | 248.38 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 94 | 248.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 106 | 248.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 115 | 248.55 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 116 | 248.57 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 118 | 248.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 123 | 248.61 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 138 | 248.62 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 143 | 248.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 155 | 248.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 219 | 248.75 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 230 | 248.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 237 | 248.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 279 | 249.31 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 280 | 249.36 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 308 | 249.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 321 | 249.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 328 | 249.60 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 412 | 250.18 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 432 | 250.29 | temperature | 10 | 43200 | < th | dose dependent | sin | 1 | NA |
| 441 | 250.43 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 443 | 250.44 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 9 |
| 446 | 250.47 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 459 | 250.51 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 461 | 250.52 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 466 | 250.57 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 481 | 250.64 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 512 | 250.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 549 | 250.92 | temperature | 10 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 556 | 250.95 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 609 | 251.03 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 624 | 251.04 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 670 | 251.09 | temperature | 10 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 696 | 251.17 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 712 | 251.24 | temperature | 10 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 725 | 251.26 | temperature | 10 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 783 | 251.35 | temperature | 10 | 43200 | < th | dose independent | sin | 2 | NA |
| 833 | 251.50 | temperature | 10 | 43200 | > th | dose independent | sin | 4 | NA |
| 952 | 251.75 | temperature | 10 | 43200 | < th | dose independent | no | NA | NA |
| 955 | 251.75 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 14 |