FiT-DB / Search/ Help/ Sample detail

Os10g0565200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0437) R2 : 0.937
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.71 (0.192) R2dC : 0.0905 R2C : 0.443
β3 : -6.88 (0.209) R2dE : 0.494 R2E : 0.846
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0643 (0.0921) R2dN8 : 0.000111 R2N8 : -0.00014
σ : 0.819
deviance : 309.31
__
_____
C
peak time of C : 1.84
E
wheather : temperature
threshold : 5.995
memory length : 287
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.7
open length of G : 9.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
279.9 0.786 11.7 0.68 2.69 -7.03 1.64 4.46 0.165 2.08 6.563 286 4.8 8.77
291.09 0.795 11.8 0.607 3.13 -6.64 -1.69 -- 0.134 1.15 9.556 286 5.02 8.73
285 0.786 11.8 0.689 2.81 -6.97 -- 3.71 0.172 1.8 7.449 275 4.83 8.9
300.09 0.807 11.8 0.627 2.65 -6.99 -- -- 0.152 1.85 6.915 289 4.72 9
308.06 0.817 11.8 0.526 -- -9.11 -- 2.96 0.0834 -- -2.882 354 4.75 8.98
652.58 1.2 11.9 0.196 8.22 -- -0.741 -- -0.117 0.561 -- -- -- --
654.93 1.2 11.9 0.224 8.22 -- -- -- -0.114 0.564 -- -- -- --
320.79 0.834 11.7 0.634 -- -9.17 -- -- 0.117 -- -1.312 359 4.65 9.04
309.31 0.819 11.8 -- 2.71 -6.88 -- -- 0.0643 1.84 5.995 287 4.7 9.03
4891.4 3.27 11.8 0.511 -- -- -- -- 0.0268 -- -- -- -- --
656.24 1.2 11.9 -- 8.22 -- -- -- -0.139 0.565 -- -- -- --
330.58 0.847 11.8 -- -- -9.14 -- -- 0.0194 -- -2.452 358 4.62 9.12
4898.29 3.27 11.8 -- -- -- -- -- -0.0299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.71 temperature 10.0 270 > th dose dependent rect. 5 9
8 317.28 temperature 10.0 90 > th dose dependent rect. 20 19
13 323.42 temperature 10.0 10 > th dose dependent rect. 20 19
22 331.60 temperature 30.0 10 < th dose dependent rect. 2 18
31 338.46 temperature 30.0 90 < th dose dependent rect. 2 17
40 344.39 temperature 20.0 10 > th dose dependent rect. 6 9
45 346.12 temperature 10.0 270 > th dose dependent rect. 18 20
105 364.90 temperature 10.0 270 > th dose dependent rect. 7 17
130 369.81 radiation 30.0 10 < th dose dependent rect. 2 18
158 376.28 radiation 40.0 10 < th dose dependent rect. 12 8
182 380.74 radiation 20.0 10 < th dose independent rect. 13 7
190 381.94 radiation 30.0 90 < th dose independent rect. 13 7
227 387.61 radiation 1.0 270 > th dose independent rect. 4 10
239 387.95 radiation 20.0 10 < th dose dependent rect. 13 20
247 388.92 temperature 10.0 10 > th dose dependent rect. 9 17
254 389.43 radiation 40.0 270 < th dose independent rect. 24 18
272 391.26 radiation 40.0 270 < th dose independent rect. 13 5
279 391.65 radiation 20.0 10 < th dose independent rect. 2 18
288 392.64 radiation 10.0 10 < th dose dependent sin 0 NA
294 393.25 radiation 40.0 270 < th dose dependent rect. 24 18
335 397.83 temperature 30.0 90 < th dose independent rect. 2 17
398 402.04 radiation 40.0 270 < th dose independent rect. 13 16
437 404.78 radiation 20.0 10 < th dose dependent rect. 10 10
468 406.44 wind 9.0 270 < th dose independent rect. 19 18
484 406.90 wind 1.0 270 > th dose independent rect. 13 6
495 407.27 humidity 50.0 270 > th dose independent rect. 19 18
503 407.59 temperature 30.0 10 < th dose independent rect. 2 18
532 408.79 temperature 20.0 10 > th dose dependent sin 1 NA
534 408.84 precipitation 0.1 270 < th dose independent rect. 19 18
535 408.84 precipitation 0.1 270 < th dose dependent rect. 19 18
562 409.73 temperature 10.0 270 > th dose independent rect. 13 6
564 409.73 atmosphere 1010.0 270 < th dose independent rect. 13 6
566 409.73 temperature 10.0 270 > th dose independent rect. 19 18
567 409.73 atmosphere 995.0 270 > th dose independent rect. 19 18
575 410.40 radiation 20.0 10 < th dose dependent rect. 10 23
589 411.22 wind 9.0 10 < th dose independent rect. 20 19
600 411.84 temperature 15.0 270 > th dose independent rect. 5 9
607 412.05 temperature 30.0 10 < th dose dependent sin 1 NA
646 413.27 humidity 50.0 10 > th dose independent rect. 15 5
650 413.34 precipitation 0.1 270 < th dose independent rect. 13 6
651 413.34 precipitation 0.1 270 < th dose dependent rect. 13 6
654 413.51 wind 9.0 270 < th dose independent rect. 13 6
655 413.51 precipitation 0.1 270 < th dose independent rect. 5 9
656 413.51 precipitation 0.1 270 < th dose dependent rect. 5 9
685 414.89 temperature 10.0 90 > th dose independent rect. 15 5
687 414.89 atmosphere 1010.0 90 < th dose independent rect. 15 5
735 415.90 atmosphere 995.0 30 > th dose independent rect. 20 19
736 415.91 wind 1.0 30 > th dose independent rect. 15 5
740 415.98 wind 9.0 270 < th dose independent rect. 5 9
745 416.09 temperature 10.0 1440 > th dose independent rect. 16 5
748 416.09 temperature 10.0 1440 > th dose independent rect. 21 19
752 416.17 temperature 25.0 90 > th dose independent rect. 9 6
754 416.20 atmosphere 995.0 270 > th dose independent rect. 13 6
765 416.36 humidity 50.0 10 > th dose dependent rect. 2 18
774 416.73 radiation 40.0 10 < th dose independent rect. 15 5
781 416.97 temperature 25.0 270 > th dose independent rect. 9 4
788 417.23 radiation 10.0 43200 < th dose dependent rect. 21 6
816 418.00 precipitation 0.1 30 < th dose independent rect. 15 5
818 418.00 precipitation 0.1 30 < th dose dependent rect. 15 5
819 418.05 atmosphere 995.0 90 > th dose independent rect. 15 5
828 418.17 atmosphere 995.0 30 > th dose dependent rect. 15 5
837 418.29 atmosphere 995.0 270 > th dose independent rect. 5 9
838 418.29 atmosphere 1015.0 270 < th dose independent rect. 5 9
839 418.29 temperature 10.0 270 > th dose independent rect. 14 15
858 418.77 wind 9.0 270 < th dose independent rect. 17 22
898 419.58 radiation 20.0 10 < th dose dependent rect. 15 23
927 420.08 temperature 30.0 10 < th dose dependent rect. 12 8
932 420.38 precipitation 0.1 270 < th dose independent rect. 17 22
933 420.38 precipitation 0.1 270 < th dose dependent rect. 17 22
945 420.64 wind 9.0 90 < th dose independent rect. 15 5
955 420.93 humidity 50.0 30 > th dose independent rect. 20 19
978 421.50 radiation 20.0 10 < th dose dependent no NA NA