Os10g0564500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/threonine-protein kinase SAPK3 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 3) (Protein kinase REK).
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Os10g0564500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Serine/threonine-protein kinase SAPK3 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 3) (Protein kinase REK).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.91 | 0.446 | 10.8 | 0.605 | 0.333 | 0.65 | 0.42 | 5.09 | 0.535 | 0.0224 | 28.9 | 1723 | -- | -- |
| 96.66 | 0.458 | 10.7 | 1.81 | 0.329 | 1.23 | 0.294 | -- | 0.55 | 0.482 | 30 | 1738 | -- | -- |
| 90.53 | 0.443 | 10.8 | 0.608 | 0.34 | 0.67 | -- | 5.09 | 0.54 | 23.5 | 28.9 | 1747 | -- | -- |
| 95.9 | 0.456 | 10.7 | 1.85 | 0.352 | 1.21 | -- | -- | 0.695 | 22.8 | 29.6 | 1754 | -- | -- |
| 97.55 | 0.46 | 10.8 | 0.627 | -- | 0.654 | -- | 4.97 | 0.55 | -- | 28.99 | 1728 | -- | -- |
| 149.22 | 0.573 | 10.7 | 1.55 | 0.289 | -- | 0.399 | -- | 0.718 | 0.919 | -- | -- | -- | -- |
| 149.78 | 0.573 | 10.7 | 1.53 | 0.29 | -- | -- | -- | 0.716 | 0.32 | -- | -- | -- | -- |
| 102.64 | 0.472 | 10.7 | 1.87 | -- | 1.21 | -- | -- | 0.686 | -- | 29.62 | 1728 | -- | -- |
| 184.16 | 0.632 | 10.7 | -- | 0.327 | 1.05 | -- | -- | 0.439 | 23 | 29.84 | 1806 | -- | -- |
| 155.05 | 0.582 | 10.7 | 1.54 | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
| 211.7 | 0.681 | 10.7 | -- | 0.312 | -- | -- | -- | 0.546 | 0.578 | -- | -- | -- | -- |
| 190.38 | 0.643 | 10.7 | -- | -- | 0.862 | -- | -- | 0.51 | -- | 29.6 | 1745 | -- | -- |
| 217.81 | 0.689 | 10.7 | -- | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 2 | 90.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 9 | 90.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 16 | 90.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 30 | 90.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 65 | 91.62 | temperature | 25 | 1440 | > th | dose dependent | sin | 5 | NA |
| 69 | 91.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 90 | 92.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 93 | 92.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 98 | 92.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 244 | 92.74 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 256 | 92.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 279 | 92.89 | temperature | 25 | 720 | > th | dose dependent | sin | 9 | NA |
| 290 | 92.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 422 | 93.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 435 | 93.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 448 | 93.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 461 | 93.91 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 516 | 94.22 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 524 | 94.24 | temperature | 10 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 559 | 94.46 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 566 | 94.49 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 572 | 94.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 591 | 94.60 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 603 | 94.66 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 605 | 94.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 652 | 94.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 666 | 94.91 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 673 | 94.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 685 | 94.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 689 | 94.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 693 | 94.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 719 | 95.05 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 730 | 95.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 769 | 95.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 781 | 95.10 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 835 | 95.12 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 858 | 95.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 865 | 95.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 873 | 95.20 | temperature | 30 | 1440 | < th | dose independent | sin | 0 | NA |
| 896 | 95.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 908 | 95.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 917 | 95.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 941 | 95.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 951 | 95.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 994 | 95.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 1000 | 95.43 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |