Os10g0563400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0563400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.03 | 0.361 | 10.2 | 0.587 | 0.585 | -1.25 | -0.27 | 15 | -0.0812 | 23.5 | 30 | 7 | -- | -- |
| 62.77 | 0.372 | 10.3 | 0.0835 | 0.601 | 0.528 | -0.315 | -- | -0.0764 | 23.6 | 30 | 7 | -- | -- |
| 59.3 | 0.359 | 10.2 | 0.607 | 0.588 | -1.26 | -- | 15.1 | -0.0797 | 23.5 | 29.98 | 5 | -- | -- |
| 62.62 | 0.371 | 10.3 | 0.0733 | 0.648 | 0.487 | -- | -- | -0.0913 | 23.8 | 27.7 | 3 | -- | -- |
| 80.12 | 0.417 | 10.2 | 0.7 | -- | -1.58 | -- | 15.8 | -0.0723 | -- | 29.74 | 6 | -- | -- |
| 64.94 | 0.378 | 10.3 | 0.11 | 0.573 | -- | -0.344 | -- | -0.0937 | 23.3 | -- | -- | -- | -- |
| 65.43 | 0.379 | 10.3 | 0.124 | 0.575 | -- | -- | -- | -0.0921 | 23.2 | -- | -- | -- | -- |
| 78.66 | 0.413 | 10.3 | -0.0339 | -- | 0.585 | -- | -- | -0.183 | -- | 17.49 | 823 | -- | -- |
| 62.74 | 0.369 | 10.3 | -- | 0.651 | 0.492 | -- | -- | -0.0992 | 23.8 | 27.6 | 13 | -- | -- |
| 86.11 | 0.434 | 10.3 | 0.138 | -- | -- | -- | -- | -0.0869 | -- | -- | -- | -- | -- |
| 65.84 | 0.38 | 10.3 | -- | 0.576 | -- | -- | -- | -0.106 | 23.2 | -- | -- | -- | -- |
| 78.68 | 0.413 | 10.3 | -- | -- | 0.583 | -- | -- | -0.188 | -- | 17.5 | 826 | -- | -- |
| 86.62 | 0.434 | 10.3 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.95 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 3 | 55.11 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 4 | 55.22 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 62 | 56.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 82 | 57.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 112 | 57.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 117 | 57.50 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 127 | 57.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 130 | 57.60 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 139 | 57.66 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 143 | 57.68 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 147 | 57.70 | temperature | 30 | 10 | > th | dose dependent | sin | 6 | NA |
| 155 | 57.74 | radiation | 10 | 30 | > th | dose independent | rect. | 6 | 3 |
| 185 | 57.79 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 190 | 57.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 191 | 57.81 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 14 |
| 192 | 57.81 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 206 | 57.88 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 207 | 57.89 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 13 |
| 212 | 57.92 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 5 |
| 253 | 57.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 261 | 57.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 323 | 58.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 402 | 58.26 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 1 |
| 404 | 58.26 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 23 |
| 478 | 58.38 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 522 | 58.51 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 21 |
| 528 | 58.53 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 21 |
| 532 | 58.54 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 552 | 58.58 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 6 | 3 |
| 564 | 58.59 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 567 | 58.60 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 573 | 58.63 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 15 |
| 618 | 58.70 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 640 | 58.72 | radiation | 40 | 270 | > th | dose dependent | sin | 11 | NA |
| 656 | 58.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 12 |
| 663 | 58.75 | radiation | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 697 | 58.80 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 731 | 58.82 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 832 | 58.89 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 880 | 58.93 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 2 |
| 960 | 58.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |