Os10g0563300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os10g0563300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.59 | 0.499 | 6.2 | 0.088 | 0.239 | -0.77 | -0.54 | -5.33 | -0.114 | 5.44 | 9.999 | 4290 | -- | -- |
| 126.78 | 0.524 | 6.18 | -0.335 | 0.345 | -0.682 | -0.783 | -- | -0.213 | 4.96 | 4.894 | 15846 | -- | -- |
| 113.31 | 0.496 | 6.2 | 0.0857 | 0.236 | -0.765 | -- | -5.31 | -0.111 | 5.54 | 10 | 4290 | -- | -- |
| 117.59 | 0.505 | 6.24 | -0.95 | 0.225 | -1.13 | -- | -- | -0.459 | 6.85 | 3.17 | 17270 | -- | -- |
| 116.19 | 0.502 | 6.2 | 0.0984 | -- | -0.782 | -- | -5.37 | -0.108 | -- | 10 | 4290 | -- | -- |
| 151.48 | 0.577 | 6.12 | -0.441 | 0.286 | -- | -0.352 | -- | -0.0369 | 4.91 | -- | -- | -- | -- |
| 151.76 | 0.577 | 6.12 | -0.441 | 0.283 | -- | -- | -- | -0.0353 | 4.56 | -- | -- | -- | -- |
| 119.7 | 0.51 | 6.22 | -0.944 | -- | -1.17 | -- | -- | -0.462 | -- | 3.221 | 17268 | -- | -- |
| 134.12 | 0.539 | 6.18 | -- | 0.45 | -1.01 | -- | -- | -0.345 | 6.71 | 4.589 | 15431 | -- | -- |
| 156.03 | 0.584 | 6.13 | -0.43 | -- | -- | -- | -- | -0.0278 | -- | -- | -- | -- | -- |
| 156.88 | 0.586 | 6.11 | -- | 0.275 | -- | -- | -- | 0.0138 | 4.61 | -- | -- | -- | -- |
| 134.52 | 0.54 | 6.2 | -- | -- | -0.962 | -- | -- | -0.395 | -- | 6.438 | 27363 | -- | -- |
| 160.9 | 0.592 | 6.11 | -- | -- | -- | -- | -- | 0.0199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.42 | radiation | 10 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 2 | 108.42 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 17 |
| 4 | 108.45 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 5 | 108.45 | radiation | 10 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 16 | 108.58 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 17 | 108.61 | radiation | 10 | 14400 | < th | dose independent | sin | 10 | NA |
| 23 | 108.66 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 44 | 108.72 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 45 | 108.72 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 65 | 108.83 | humidity | 70 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 122 | 108.97 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 123 | 108.97 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 125 | 108.98 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 129 | 108.98 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 158 | 109.06 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 181 | 109.14 | radiation | 40 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 187 | 109.16 | radiation | 40 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 197 | 109.20 | humidity | 70 | 43200 | > th | dose dependent | sin | 0 | NA |
| 284 | 109.40 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 307 | 109.45 | humidity | 70 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 309 | 109.45 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 342 | 109.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 343 | 109.55 | radiation | 20 | 14400 | < th | dose dependent | sin | 11 | NA |
| 396 | 109.64 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 397 | 109.64 | radiation | 10 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 398 | 109.64 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 457 | 109.71 | radiation | 1 | 14400 | > th | dose dependent | sin | 11 | NA |
| 489 | 109.73 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 493 | 109.74 | humidity | 80 | 43200 | < th | dose independent | sin | 20 | NA |
| 506 | 109.75 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 520 | 109.77 | humidity | 80 | 43200 | > th | dose independent | sin | 21 | NA |
| 548 | 109.79 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 565 | 109.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 586 | 109.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 611 | 109.85 | radiation | 10 | 14400 | < th | dose independent | no | NA | NA |
| 622 | 109.85 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 625 | 109.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 646 | 109.85 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 20 |