Os10g0562500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase KIPK.
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Os10g0562500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase KIPK.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.77 | 0.465 | 7.59 | 1.18 | 0.176 | -1.26 | 0.785 | -0.503 | 1.02 | 5.82 | 26.27 | 76 | -- | -- |
| 98.05 | 0.461 | 7.6 | 1.12 | 0.177 | -1.21 | 0.703 | -- | 1.01 | 6.18 | 26.5 | 84 | -- | -- |
| 99.15 | 0.464 | 7.6 | 1.15 | 0.183 | -1.22 | -- | -0.299 | 0.999 | 6.17 | 26.3 | 70 | -- | -- |
| 99.03 | 0.463 | 7.6 | 1.12 | 0.186 | -1.19 | -- | -- | 1 | 7.19 | 26.3 | 90 | -- | -- |
| 100.44 | 0.467 | 7.59 | 1.18 | -- | -1.19 | -- | -0.342 | 1.03 | -- | 25.7 | 72 | -- | -- |
| 119.18 | 0.512 | 7.54 | 1.41 | 0.282 | -- | 0.0199 | -- | 1.26 | 12 | -- | -- | -- | -- |
| 119.18 | 0.511 | 7.54 | 1.41 | 0.282 | -- | -- | -- | 1.26 | 12 | -- | -- | -- | -- |
| 100.6 | 0.467 | 7.6 | 1.13 | -- | -1.16 | -- | -- | 1.02 | -- | 25.8 | 70 | -- | -- |
| 128.39 | 0.528 | 7.66 | -- | 0.275 | -1.64 | -- | -- | 0.769 | 5.31 | 26.64 | 98 | -- | -- |
| 124.18 | 0.521 | 7.55 | 1.4 | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
| 171.5 | 0.613 | 7.57 | -- | 0.264 | -- | -- | -- | 1.11 | 11.7 | -- | -- | -- | -- |
| 131.46 | 0.534 | 7.64 | -- | -- | -1.55 | -- | -- | 0.826 | -- | 25.74 | 89 | -- | -- |
| 175.89 | 0.619 | 7.58 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 21 | 91.45 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 25 | 91.85 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 28 | 92.11 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 2 | 19 |
| 52 | 93.06 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 53 | 93.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 149 | 94.99 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 182 | 95.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 189 | 95.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 252 | 96.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 278 | 96.74 | temperature | 15.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 331 | 97.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 379 | 97.54 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 413 | 97.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 450 | 98.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 459 | 98.14 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 472 | 98.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 491 | 98.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 494 | 98.34 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 527 | 98.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 530 | 98.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 534 | 98.57 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 577 | 98.82 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 589 | 98.86 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 591 | 98.87 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 598 | 98.88 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 610 | 98.94 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 629 | 99.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 641 | 99.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 656 | 99.13 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 662 | 99.13 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 677 | 99.18 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 689 | 99.21 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 705 | 99.28 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 714 | 99.31 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 726 | 99.35 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 20 |
| 742 | 99.41 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 762 | 99.45 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 763 | 99.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 768 | 99.46 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 792 | 99.55 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 812 | 99.61 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 857 | 99.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 876 | 99.85 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 877 | 99.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 908 | 99.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 916 | 99.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 931 | 100.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 933 | 100.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 985 | 100.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 986 | 100.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |