Os10g0561700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0561700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.95 | 0.669 | 3.01 | 0.697 | 0.293 | -6.01 | 1.15 | 20.4 | 0.0715 | 13 | 49.58 | 10 | -- | -- |
| 204.6 | 0.671 | 3.07 | 0.528 | 0.293 | 1.85 | 1.17 | -- | 0.0753 | 12.9 | 48 | 10 | -- | -- |
| 208.03 | 0.672 | 3 | 0.716 | 0.282 | -5.81 | -- | 20.5 | 0.0803 | 12.3 | 49.17 | 12 | -- | -- |
| 207.99 | 0.672 | 3.07 | 0.532 | 0.276 | 2.13 | -- | -- | 0.0791 | 12.2 | 47.8 | 28 | -- | -- |
| 212.67 | 0.679 | 3.01 | 0.692 | -- | -5.63 | -- | 20.5 | 0.0783 | -- | 48.55 | 18 | -- | -- |
| 214.2 | 0.686 | 3.07 | 0.599 | 0.339 | -- | 1.4 | -- | 0.0674 | 12.8 | -- | -- | -- | -- |
| 222.46 | 0.698 | 3.07 | 0.65 | 0.337 | -- | -- | -- | 0.0737 | 12.2 | -- | -- | -- | -- |
| 212.72 | 0.679 | 3.07 | 0.515 | -- | 2.26 | -- | -- | 0.0803 | -- | 48.09 | 28 | -- | -- |
| 215.24 | 0.683 | 3.08 | -- | 0.262 | 2.33 | -- | -- | 0.0279 | 11.9 | 48.26 | 29 | -- | -- |
| 229.62 | 0.708 | 3.07 | 0.639 | -- | -- | -- | -- | 0.0686 | -- | -- | -- | -- | -- |
| 233.61 | 0.715 | 3.08 | -- | 0.328 | -- | -- | -- | 0.0013 | 12.1 | -- | -- | -- | -- |
| 219.51 | 0.69 | 3.08 | -- | -- | 2.43 | -- | -- | 0.028 | -- | 48.4 | 31 | -- | -- |
| 240.4 | 0.724 | 3.09 | -- | -- | -- | -- | -- | -0.00237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.03 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 8 | 197.03 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 23 | 197.30 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 83 | 197.30 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 143 | 197.31 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 144 | 197.34 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 149 | 201.77 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 11 | 3 |
| 155 | 202.46 | humidity | 50 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 156 | 202.46 | humidity | 50 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 189 | 202.57 | humidity | 50 | 10 | < th | dose dependent | sin | 11 | NA |
| 193 | 202.68 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 2 |
| 195 | 202.88 | humidity | 50 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 197 | 202.90 | humidity | 50 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 232 | 202.95 | humidity | 50 | 30 | < th | dose dependent | rect. | 11 | 6 |
| 251 | 202.99 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 1 |
| 252 | 202.99 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 256 | 203.02 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 15 |
| 258 | 203.02 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 259 | 203.04 | humidity | 50 | 10 | < th | dose dependent | sin | 21 | NA |
| 261 | 203.04 | humidity | 50 | 10 | < th | dose dependent | no | NA | NA |
| 397 | 203.04 | humidity | 50 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 441 | 203.07 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 446 | 203.09 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 3 |
| 467 | 203.10 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 482 | 203.20 | humidity | 50 | 270 | < th | dose independent | sin | 9 | NA |
| 485 | 203.20 | humidity | 50 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 486 | 203.21 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 22 |
| 487 | 203.21 | temperature | 20 | 720 | < th | dose dependent | sin | 3 | NA |
| 517 | 203.26 | humidity | 50 | 270 | < th | dose dependent | sin | 9 | NA |
| 538 | 203.31 | humidity | 80 | 30 | < th | dose independent | rect. | 11 | 3 |
| 544 | 203.34 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 795 | 203.52 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 804 | 203.54 | humidity | 50 | 270 | < th | dose independent | rect. | 16 | 21 |
| 807 | 203.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 834 | 203.59 | humidity | 50 | 90 | < th | dose independent | sin | 6 | NA |
| 842 | 203.62 | humidity | 50 | 270 | > th | dose independent | sin | 8 | NA |
| 914 | 203.74 | humidity | 50 | 10 | < th | dose independent | rect. | 14 | 22 |
| 936 | 203.81 | humidity | 50 | 10 | < th | dose independent | rect. | 11 | 1 |