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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0561000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0298) R2 : 0.587
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.52 (0.0602) R2dE : 0.582 R2E : 0.563
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.283 (0.0629) R2dN8 : 0.0237 R2N8 : 0.00499
σ : 0.561
deviance : 144.85
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 17.8
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.77
open length of G : 22.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.33 0.536 3.65 0.144 0.558 -1.29 -0.369 -0.921 -0.253 8.17 19.48 6 3.17 23.3
132.53 0.536 3.65 0.143 0.57 -1.25 0.505 -- -0.248 8.75 19.2 4 3.02 23.2
130.58 0.532 3.65 0.138 0.558 -1.29 -- -0.745 -0.252 8.22 19.46 5 3.25 23.4
133.26 0.538 3.65 0.156 0.54 -1.3 -- -- -0.255 8.21 19.03 4 3.02 23.4
146.25 0.563 3.65 0.167 -- -1.32 -- -0.73 -0.19 -- 18.81 5 3.75 23.2
172.81 0.616 3.61 0.151 1.67 -- 0.847 -- -0.156 10.8 -- -- -- --
175.79 0.621 3.6 0.185 1.67 -- -- -- -0.154 10.7 -- -- -- --
144.81 0.56 3.66 0.0372 -- -1.5 -- -- -0.264 -- 17.75 4 3.56 22.5
133.9 0.539 3.66 -- 0.529 -1.31 -- -- -0.268 8.12 19.02 4 3.08 23.3
347.46 0.871 3.65 0.152 -- -- -- -- -0.163 -- -- -- -- --
176.69 0.622 3.61 -- 1.67 -- -- -- -0.174 10.7 -- -- -- --
144.85 0.561 3.67 -- -- -1.52 -- -- -0.283 -- 17.8 3 3.77 22.6
348.07 0.871 3.65 -- -- -- -- -- -0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.25 radiation 20.0 10 < th dose dependent rect. 3 23
2 139.21 temperature 15.0 30 > th dose independent rect. 3 23
3 139.22 wind 3.0 30 < th dose dependent rect. 2 1
5 139.23 wind 3.0 30 < th dose independent rect. 2 1
6 139.23 temperature 25.0 30 < th dose independent rect. 2 1
11 139.26 humidity 80.0 30 > th dose independent rect. 2 1
13 139.27 temperature 10.0 30 > th dose independent rect. 2 1
16 139.27 humidity 50.0 30 > th dose independent rect. 2 1
19 139.27 atmosphere 995.0 30 > th dose independent rect. 2 1
20 139.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 139.27 radiation 1.0 30 < th dose independent rect. 2 1
27 139.27 precipitation 0.1 30 < th dose independent rect. 2 1
29 139.27 temperature 10.0 30 > th dose dependent rect. 2 1
30 139.27 humidity 50.0 30 > th dose dependent rect. 2 1
32 139.27 radiation 1.0 30 < th dose dependent rect. 2 1
37 139.27 precipitation 0.1 30 < th dose dependent rect. 2 1
40 139.28 atmosphere 1015.0 30 < th dose dependent rect. 2 1
42 139.30 temperature 10.0 30 > th dose dependent rect. 3 4
45 139.33 atmosphere 1005.0 30 > th dose dependent rect. 2 1
46 139.34 atmosphere 995.0 30 > th dose dependent rect. 2 1
49 139.37 temperature 30.0 30 < th dose dependent rect. 2 1
57 139.74 wind 1.0 30 > th dose independent rect. 2 1
103 140.18 temperature 15.0 270 > th dose dependent rect. 3 1
105 140.21 wind 9.0 30 < th dose independent rect. 3 23
113 141.17 wind 9.0 30 < th dose independent rect. 3 4
114 141.17 temperature 10.0 30 > th dose independent rect. 3 4
116 141.17 temperature 30.0 30 < th dose independent rect. 3 4
117 141.17 humidity 50.0 30 > th dose independent rect. 3 4
120 141.17 atmosphere 995.0 30 > th dose independent rect. 3 4
121 141.17 atmosphere 1015.0 30 < th dose independent rect. 3 4
122 141.17 radiation 20.0 30 < th dose independent rect. 3 4
125 141.17 temperature 10.0 30 > th dose independent rect. 7 20
127 141.36 radiation 40.0 30 < th dose dependent rect. 3 4
128 141.37 temperature 20.0 270 > th dose independent rect. 3 1
129 141.43 wind 9.0 30 < th dose independent rect. 7 20
130 141.43 humidity 50.0 30 > th dose dependent rect. 3 4
132 141.51 atmosphere 995.0 30 > th dose dependent rect. 3 4
133 141.52 wind 9.0 30 < th dose dependent rect. 3 4
134 141.55 radiation 30.0 10 < th dose dependent rect. 3 6
138 141.69 precipitation 0.1 30 < th dose independent rect. 7 20
139 141.69 precipitation 0.1 30 < th dose dependent rect. 7 20
141 141.72 precipitation 0.1 30 < th dose independent rect. 3 4
142 141.72 precipitation 0.1 30 < th dose dependent rect. 3 4
150 142.08 radiation 20.0 10 < th dose dependent rect. 3 11
151 142.13 wind 3.0 30 < th dose independent rect. 3 4
158 142.29 atmosphere 995.0 30 > th dose independent rect. 7 20
159 142.32 temperature 15.0 90 > th dose independent rect. 3 16
161 142.45 atmosphere 995.0 270 > th dose dependent rect. 3 1
163 142.48 humidity 60.0 270 > th dose dependent rect. 3 1
186 142.73 wind 9.0 30 < th dose dependent rect. 19 8
196 142.97 wind 9.0 30 < th dose dependent rect. 7 20
202 143.15 atmosphere 1000.0 90 > th dose independent rect. 3 16
211 143.30 wind 9.0 90 < th dose independent rect. 3 16
214 143.36 humidity 50.0 30 > th dose dependent rect. 3 6
222 143.48 radiation 10.0 10 < th dose independent rect. 3 23
225 143.52 atmosphere 1015.0 30 < th dose independent rect. 7 20
228 143.62 wind 9.0 270 < th dose independent rect. 3 1
229 143.62 temperature 10.0 270 > th dose independent rect. 3 1
231 143.62 temperature 30.0 270 < th dose independent rect. 3 1
232 143.62 humidity 50.0 270 > th dose independent rect. 3 1
235 143.62 atmosphere 995.0 270 > th dose independent rect. 3 1
236 143.62 atmosphere 1010.0 270 < th dose independent rect. 3 1
238 143.62 radiation 1.0 270 < th dose independent rect. 3 1
243 143.62 temperature 10.0 270 > th dose independent rect. 4 23
244 143.62 radiation 1.0 270 < th dose dependent rect. 3 1
252 143.66 atmosphere 1000.0 30 > th dose independent rect. 3 23
253 143.67 wind 7.0 90 < th dose independent rect. 19 8
255 143.68 humidity 90.0 270 > th dose independent rect. 3 1
275 143.80 atmosphere 995.0 30 > th dose dependent rect. 3 6
277 143.84 temperature 10.0 90 > th dose independent rect. 19 8
278 143.84 temperature 30.0 90 < th dose independent rect. 19 8
279 143.84 humidity 50.0 90 > th dose independent rect. 19 8
281 143.84 atmosphere 995.0 90 > th dose independent rect. 19 8
282 143.84 radiation 1.0 90 < th dose independent rect. 19 8
288 143.84 atmosphere 1015.0 90 < th dose independent rect. 3 16
289 143.84 radiation 1.0 90 < th dose dependent rect. 19 8
304 144.03 precipitation 0.1 30 < th dose independent rect. 3 23
305 144.03 precipitation 0.1 30 < th dose dependent rect. 3 23
306 144.06 radiation 20.0 10 < th dose dependent rect. 3 14
308 144.07 precipitation 0.1 90 < th dose independent rect. 19 8
309 144.07 precipitation 0.1 90 < th dose dependent rect. 19 8
312 144.14 atmosphere 995.0 30 > th dose dependent rect. 3 16
320 144.28 wind 9.0 1440 < th dose independent rect. 4 4
321 144.28 temperature 10.0 1440 > th dose independent rect. 4 4
324 144.28 temperature 30.0 1440 < th dose independent rect. 4 4
328 144.28 humidity 50.0 1440 > th dose independent rect. 4 4
333 144.28 atmosphere 995.0 1440 > th dose independent rect. 4 4
334 144.28 atmosphere 1015.0 1440 < th dose independent rect. 4 4
335 144.28 temperature 10.0 1440 > th dose independent rect. 8 20
342 144.40 wind 7.0 30 < th dose dependent rect. 3 6
352 144.55 wind 3.0 30 < th dose independent rect. 3 6
357 144.59 radiation 1.0 14400 < th dose dependent rect. 3 1
359 144.62 radiation 10.0 90 < th dose dependent rect. 3 11
361 144.65 radiation 10.0 10 < th dose independent rect. 3 11
368 144.74 temperature 10.0 30 > th dose dependent rect. 3 6
395 145.07 radiation 10.0 90 < th dose dependent rect. 3 14
398 145.12 humidity 50.0 30 > th dose dependent rect. 18 9
402 145.18 wind 9.0 270 < th dose dependent rect. 3 1
412 145.26 wind 9.0 270 < th dose independent rect. 4 23
415 145.29 precipitation 0.1 90 < th dose independent rect. 3 16
417 145.29 precipitation 0.1 90 < th dose dependent rect. 3 16
460 145.69 atmosphere 1000.0 30 > th dose independent rect. 3 6
461 145.69 temperature 10.0 90 > th dose dependent rect. 19 8
473 145.80 precipitation 0.1 270 < th dose independent rect. 3 1
475 145.80 precipitation 0.1 270 < th dose dependent rect. 3 1
480 145.87 humidity 70.0 30 > th dose independent rect. 3 6
513 146.15 wind 1.0 270 > th dose independent rect. 3 1
526 146.24 wind 9.0 30 < th dose dependent rect. 9 18
552 146.42 wind 9.0 30 < th dose independent rect. 3 6
553 146.42 temperature 10.0 30 > th dose independent rect. 3 6
555 146.42 temperature 30.0 30 < th dose independent rect. 3 6
556 146.42 humidity 50.0 30 > th dose independent rect. 3 6
559 146.42 atmosphere 1015.0 30 < th dose independent rect. 3 6
560 146.42 temperature 10.0 30 > th dose independent rect. 9 18
606 146.60 wind 9.0 30 < th dose independent rect. 9 18
625 146.71 radiation 1.0 90 < th dose independent rect. 3 14
637 146.86 radiation 10.0 10 < th dose independent rect. 3 14
656 147.10 precipitation 0.1 30 < th dose independent rect. 3 6
657 147.10 precipitation 0.1 30 < th dose dependent rect. 3 6
660 147.11 precipitation 0.1 30 < th dose independent rect. 9 18
662 147.11 precipitation 0.1 30 < th dose dependent rect. 9 18
670 147.20 wind 1.0 90 > th dose independent rect. 3 4
682 147.33 humidity 50.0 30 > th dose independent rect. 7 20
684 147.34 radiation 1.0 90 < th dose independent rect. 3 11
686 147.35 atmosphere 1015.0 90 < th dose independent rect. 19 8
692 147.37 radiation 40.0 1440 < th dose independent rect. 4 4
693 147.37 temperature 25.0 270 < th dose independent rect. 23 7
696 147.38 atmosphere 995.0 30 > th dose independent rect. 9 18
709 147.46 radiation 10.0 10 < th dose independent rect. 3 16
713 147.49 temperature 10.0 90 > th dose dependent rect. 3 16
723 147.57 humidity 90.0 270 > th dose independent rect. 24 5
811 147.85 wind 9.0 1440 < th dose independent rect. 3 1
812 147.85 temperature 10.0 1440 > th dose independent rect. 3 1
815 147.85 temperature 30.0 1440 < th dose independent rect. 3 1
819 147.85 humidity 50.0 1440 > th dose independent rect. 3 1
828 147.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
829 147.85 radiation 1.0 1440 < th dose independent rect. 3 1
850 147.85 temperature 10.0 1440 > th dose independent rect. 4 23
963 148.25 precipitation 0.1 270 < th dose independent rect. 4 23
965 148.25 precipitation 0.1 270 < th dose dependent rect. 4 23