Os10g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.91 | 0.738 | 3.22 | -0.142 | 0.206 | -7.95 | -0.782 | 27.7 | 0.14 | 5.56 | 1.547 | 6 | -- | -- |
| 255.98 | 0.751 | 3.2 | -0.118 | 0.258 | -0.0453 | -0.984 | -- | 0.116 | 5.16 | 1.547 | 6 | -- | -- |
| 248.25 | 0.734 | 3.22 | -0.148 | 0.204 | -8.2 | -- | 28.8 | 0.142 | 4.68 | 4.354 | 5 | -- | -- |
| 258.28 | 0.749 | 3.2 | -0.121 | 0.251 | -0.221 | -- | -- | 0.121 | 4.66 | 1.641 | 5 | -- | -- |
| 250.43 | 0.737 | 3.22 | -0.143 | -- | -8.74 | -- | 30.4 | 0.15 | -- | 4.363 | 5 | -- | -- |
| 255.98 | 0.75 | 3.2 | -0.117 | 0.258 | -- | -0.981 | -- | 0.116 | 5.15 | -- | -- | -- | -- |
| 258.34 | 0.753 | 3.2 | -0.118 | 0.253 | -- | -- | -- | 0.12 | 4.64 | -- | -- | -- | -- |
| 261.61 | 0.753 | 3.2 | -0.113 | -- | -0.34 | -- | -- | 0.128 | -- | 1.897 | 5 | -- | -- |
| 258.67 | 0.749 | 3.19 | -- | 0.249 | -0.182 | -- | -- | 0.135 | 4.67 | 1.666 | 5 | -- | -- |
| 261.73 | 0.756 | 3.2 | -0.108 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 258.7 | 0.752 | 3.19 | -- | 0.251 | -- | -- | -- | 0.133 | 4.66 | -- | -- | -- | -- |
| 261.94 | 0.754 | 3.2 | -- | -- | -0.3 | -- | -- | 0.141 | -- | 1.828 | 5 | -- | -- |
| 262.04 | 0.756 | 3.2 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.59 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 2 | 242.06 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 3 | 242.41 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 3 |
| 27 | 242.41 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 83 | 244.65 | precipitation | 0.1 | 10 | < th | dose independent | sin | 3 | NA |
| 84 | 244.65 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 3 | NA |
| 87 | 244.79 | precipitation | 0.1 | 10 | > th | dose independent | sin | 3 | NA |
| 88 | 244.79 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 3 | NA |
| 93 | 244.82 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 97 | 244.82 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 108 | 245.10 | wind | 7.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 131 | 245.68 | wind | 7.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 140 | 245.97 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 143 | 245.99 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 154 | 246.31 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 168 | 246.92 | humidity | 60.0 | 10 | < th | dose independent | rect. | 13 | 4 |
| 172 | 246.96 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 177 | 247.02 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 178 | 247.04 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 11 |
| 205 | 247.09 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 11 |
| 285 | 247.19 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 287 | 247.20 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 22 | 8 |
| 299 | 247.20 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 332 | 247.38 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 444 | 247.74 | precipitation | 0.1 | 10 | > th | dose independent | no | NA | NA |
| 445 | 247.74 | precipitation | 0.1 | 10 | < th | dose independent | no | NA | NA |
| 485 | 247.74 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 23 |
| 486 | 247.74 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 23 |
| 498 | 247.74 | precipitation | 0.1 | 10 | < th | dose dependent | no | NA | NA |
| 520 | 247.75 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 521 | 247.76 | precipitation | 0.1 | 10 | > th | dose dependent | no | NA | NA |
| 601 | 247.88 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 1 | 13 |
| 615 | 247.90 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 7 | NA |
| 628 | 247.94 | precipitation | 0.1 | 90 | < th | dose independent | sin | 7 | NA |
| 629 | 247.94 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 7 | NA |
| 635 | 247.97 | precipitation | 0.1 | 90 | > th | dose independent | sin | 7 | NA |
| 637 | 248.00 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 642 | 248.05 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 11 |
| 655 | 248.18 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 658 | 248.19 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 671 | 248.27 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 12 |
| 684 | 248.33 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 685 | 248.34 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 24 | 5 |
| 688 | 248.36 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 24 | 5 |
| 692 | 248.38 | wind | 7.0 | 90 | < th | dose independent | rect. | 12 | 11 |
| 693 | 248.38 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 24 | 11 |
| 701 | 248.38 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 24 | 11 |
| 726 | 248.44 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 17 |
| 754 | 248.51 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 783 | 248.58 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 17 |
| 784 | 248.59 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 8 |
| 798 | 248.61 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 799 | 248.61 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 820 | 248.64 | wind | 9.0 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 821 | 248.64 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 18 |
| 851 | 248.73 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 12 | 11 |
| 861 | 248.75 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 882 | 248.81 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 13 | 4 |
| 892 | 248.85 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 917 | 248.91 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 935 | 248.97 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 21 |
| 968 | 249.02 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 14 |