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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0559400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA, complete sequence.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.035) R2 : 0.253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.33 (0.109) R2dE : 0.25 R2E : 0.237
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.199 (0.074) R2dN8 : 0.0158 R2N8 : 0.00278
σ : 0.658
deviance : 199.3
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.4
memory length : 1698
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.97 0.642 4.69 0.312 0.38 -1.42 -0.0579 -0.181 0.25 0.285 25.18 1698 -- --
186.98 0.637 4.69 0.344 0.381 -1.43 -0.0579 -- 0.261 0.164 25.15 1703 -- --
186.98 0.637 4.69 0.313 0.381 -1.42 -- -0.188 0.252 0.258 25.17 1702 -- --
186.99 0.637 4.69 0.355 0.382 -1.44 -- -- 0.257 0.217 25.22 1702 -- --
196.05 0.652 4.68 0.366 -- -1.42 -- -0.0235 0.27 -- 25.11 1686 -- --
257.36 0.752 4.72 -0.102 0.356 -- -0.163 -- 0.105 1.45 -- -- -- --
257.46 0.751 4.72 -0.0961 0.356 -- -- -- 0.106 1.45 -- -- -- --
196.05 0.652 4.68 0.369 -- -1.42 -- -- 0.273 -- 25.08 1686 -- --
190.09 0.642 4.7 -- 0.388 -1.37 -- -- 0.204 0.32 25.42 1708 -- --
265.25 0.761 4.71 -0.082 -- -- -- -- 0.113 -- -- -- -- --
257.71 0.751 4.72 -- 0.354 -- -- -- 0.117 1.44 -- -- -- --
199.3 0.658 4.7 -- -- -1.33 -- -- 0.199 -- 25.4 1698 -- --
265.43 0.76 4.71 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.95 temperature 25 14400 > th dose dependent rect. 19 1
2 185.09 temperature 25 14400 > th dose dependent rect. 18 4
10 185.72 temperature 30 14400 < th dose independent rect. 14 21
11 185.77 temperature 30 14400 > th dose independent rect. 14 21
16 185.94 temperature 25 14400 > th dose dependent rect. 17 15
18 185.97 temperature 30 14400 > th dose dependent rect. 14 1
32 186.16 temperature 25 14400 > th dose independent rect. 4 4
33 186.18 temperature 30 14400 < th dose independent sin 12 NA
43 186.24 temperature 25 14400 < th dose independent rect. 4 4
50 186.28 temperature 30 14400 > th dose independent sin 12 NA
52 186.30 temperature 25 14400 > th dose dependent rect. 17 12
57 186.33 temperature 30 14400 > th dose dependent rect. 13 20
63 186.36 temperature 30 14400 > th dose dependent rect. 13 6
105 186.43 temperature 30 14400 > th dose independent rect. 14 5
126 186.46 temperature 30 14400 < th dose independent rect. 14 13
133 186.48 temperature 30 14400 < th dose independent rect. 14 10
140 186.49 temperature 30 14400 < th dose independent rect. 14 5
145 186.50 temperature 30 14400 > th dose independent rect. 18 22
148 186.51 temperature 30 14400 > th dose dependent sin 15 NA
159 186.55 temperature 30 14400 < th dose independent rect. 18 22
179 186.59 temperature 25 14400 > th dose dependent rect. 4 4
228 186.68 temperature 30 14400 > th dose independent no NA NA
229 186.68 temperature 30 14400 > th dose independent rect. 8 11
339 186.70 temperature 25 14400 > th dose dependent sin 11 NA
359 186.72 temperature 30 14400 > th dose independent rect. 8 8
371 186.72 temperature 30 14400 < th dose independent rect. 8 19
384 186.73 temperature 30 14400 < th dose independent no NA NA
387 186.73 temperature 30 14400 < th dose independent rect. 8 11
406 186.73 temperature 30 14400 < th dose independent rect. 2 17
463 186.73 temperature 30 14400 > th dose dependent rect. 17 23
513 186.77 temperature 30 14400 > th dose dependent no NA NA
647 186.83 temperature 25 14400 > th dose independent rect. 22 1
686 186.84 temperature 30 14400 < th dose independent rect. 23 17
699 186.85 temperature 30 14400 < th dose independent rect. 8 8
709 186.85 temperature 30 14400 < th dose independent rect. 2 14
894 187.16 temperature 30 14400 > th dose independent rect. 15 1
920 187.19 temperature 25 14400 < th dose independent rect. 22 2