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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0558700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.12 (0.0508) R2 : 0.627
β1 : 2.34 (0.189) R2dD : 0.134 R2D : 0.00432
β2 : 1.66 (0.126) R2dC : 0.155 R2C : 0.231
β3 : 2.97 (0.201) R2dE : 0.199 R2E : 0.236
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.25 (0.109) R2dN8 : 0.147 R2N8 : 0.0929
σ : 0.95
deviance : 416.36
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_____
C
peak time of C : 0.336
E
wheather : humidity
threshold : 55.65
memory length : 1237
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 3.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
405.88 0.947 6.14 2.31 1.75 2.97 1.01 1.46 1.26 0.121 57.42 1257 11.1 2.66
409.15 0.942 6.12 2.43 1.71 2.96 1.36 -- 1.27 0.0642 56.16 1258 11.1 2.72
409.8 0.943 6.14 2.29 1.74 3.01 -- 1.89 1.25 0.158 57.14 1255 11.1 2.65
416.36 0.95 6.12 2.34 1.66 2.97 -- -- 1.25 0.336 55.65 1237 11.1 3.03
447.07 0.985 6.13 1.98 -- 3.64 -- 1.43 1.15 -- 40.17 948 12.9 5.76
604.84 1.15 6.12 1.87 2.22 -- 1.07 -- 1.33 23.8 -- -- -- --
609.67 1.16 6.12 1.82 2.21 -- -- -- 1.32 23.9 -- -- -- --
453.61 0.992 6.09 2.06 -- 3.75 -- -- 1.24 -- 42.3 920 12.8 6.5
547.42 1.09 6.16 -- 1.6 2.59 -- -- 1.01 0.169 55.04 1163 11.5 4.2
917.67 1.42 6.07 1.89 -- -- -- -- 1.35 -- -- -- -- --
697.11 1.24 6.17 -- 2.24 -- -- -- 1.12 24 -- -- -- --
558.49 1.1 6.15 -- -- 3.57 -- -- 1 -- 41.37 892 13.1 6.57
1011.75 1.48 6.12 -- -- -- -- -- 1.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.17 humidity 50 1440 > th dose dependent rect. 11 3
6 447.11 humidity 90 1440 < th dose dependent rect. 11 3
8 447.59 humidity 50 1440 > th dose dependent rect. 9 8
13 448.50 humidity 90 1440 < th dose dependent rect. 7 10
22 448.98 humidity 90 1440 < th dose dependent sin 0 NA
31 449.81 humidity 70 1440 > th dose independent rect. 17 21
37 450.07 humidity 50 1440 > th dose dependent sin 23 NA
117 451.87 humidity 80 1440 < th dose independent rect. 7 8
138 452.22 humidity 80 1440 < th dose dependent rect. 18 23
220 453.10 humidity 80 1440 < th dose dependent rect. 15 23
282 453.68 humidity 80 1440 < th dose dependent rect. 10 23
289 453.72 humidity 80 1440 > th dose independent rect. 7 9
308 453.86 humidity 80 1440 < th dose dependent no NA NA
352 454.37 humidity 50 1440 > th dose dependent rect. 13 1
392 454.85 humidity 80 1440 < th dose dependent rect. 13 23
455 455.61 humidity 70 1440 > th dose independent rect. 9 23
534 456.87 humidity 70 1440 > th dose independent rect. 2 19
535 456.87 humidity 70 1440 > th dose independent rect. 2 21
539 456.89 humidity 70 1440 > th dose independent rect. 9 12
544 456.90 humidity 70 1440 > th dose independent rect. 9 14
546 456.90 humidity 70 1440 > th dose independent rect. 4 16
562 456.92 humidity 70 1440 > th dose independent rect. 6 14
564 456.92 humidity 70 1440 > th dose independent rect. 6 17
571 456.94 humidity 70 1440 > th dose independent rect. 9 20
578 456.96 humidity 70 1440 > th dose independent rect. 6 23
579 456.96 humidity 70 1440 > th dose independent rect. 22 23
580 456.97 humidity 70 1440 > th dose independent no NA NA
600 457.00 humidity 70 1440 > th dose independent rect. 6 21
749 458.67 humidity 90 1440 < th dose dependent rect. 13 1
804 459.67 humidity 70 1440 < th dose independent rect. 17 21
811 459.82 humidity 70 1440 > th dose independent sin 21 NA
882 460.83 humidity 80 1440 < th dose independent sin 1 NA
906 461.16 humidity 80 1440 > th dose independent sin 1 NA
953 462.11 humidity 70 1440 < th dose independent rect. 10 22