Os10g0558400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os10g0558400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 394.22 | 0.933 | 3.12 | 0.231 | 0.0977 | -0.453 | -0.577 | -0.698 | -0.0665 | 5.37 | 1006 | 1696 | -- | -- |
| 395.8 | 0.927 | 3.13 | 0.226 | 0.0896 | -0.471 | -0.511 | -- | -0.0485 | 5.58 | 1006 | 1693 | -- | -- |
| 395.02 | 0.926 | 3.12 | 0.228 | 0.0942 | -0.463 | -- | -0.655 | -0.0593 | 4.67 | 1006 | 1695 | -- | -- |
| 396.42 | 0.927 | 3.13 | 0.223 | 0.0852 | -0.482 | -- | -- | -0.0418 | 4.84 | 1006 | 1693 | -- | -- |
| 395.49 | 0.926 | 3.12 | 0.232 | -- | -0.466 | -- | -0.632 | -0.0551 | -- | 1006 | 1695 | -- | -- |
| 407 | 0.946 | 3.17 | 0.28 | 0.102 | -- | -0.655 | -- | -0.241 | 5.5 | -- | -- | -- | -- |
| 408.02 | 0.946 | 3.17 | 0.277 | 0.1 | -- | -- | -- | -0.238 | 4.53 | -- | -- | -- | -- |
| 396.8 | 0.928 | 3.12 | 0.228 | -- | -0.486 | -- | -- | -0.0357 | -- | 1006 | 1693 | -- | -- |
| 397.75 | 0.929 | 3.13 | -- | 0.0885 | -0.496 | -- | -- | -0.0589 | 4.53 | 1006 | 1695 | -- | -- |
| 408.56 | 0.944 | 3.17 | 0.281 | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
| 410.04 | 0.947 | 3.18 | -- | 0.106 | -- | -- | -- | -0.269 | 4.47 | -- | -- | -- | -- |
| 398.17 | 0.929 | 3.13 | -- | -- | -0.499 | -- | -- | -0.0555 | -- | 1006 | 1695 | -- | -- |
| 410.64 | 0.946 | 3.18 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 379.12 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 1 |
| 2 | 379.18 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 10 | 380.96 | humidity | 80.0 | 30 | < th | dose independent | rect. | 23 | 1 |
| 13 | 380.96 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 54 | 388.03 | wind | 1.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 58 | 388.29 | wind | 1.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 61 | 388.33 | wind | 1.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 86 | 389.08 | wind | 1.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 91 | 389.21 | wind | 1.0 | 720 | < th | dose independent | rect. | 8 | 7 |
| 97 | 389.41 | wind | 1.0 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 101 | 389.56 | wind | 1.0 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 121 | 390.44 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 132 | 390.80 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 142 | 391.06 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 19 |
| 152 | 391.58 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 159 | 391.82 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 163 | 391.89 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 166 | 391.97 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 180 | 392.35 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 182 | 392.35 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 187 | 392.42 | wind | 3.0 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 204 | 392.68 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 211 | 392.78 | humidity | 50.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 212 | 392.86 | wind | 3.0 | 720 | < th | dose dependent | rect. | 10 | 4 |
| 216 | 392.97 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 218 | 392.99 | wind | 3.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 221 | 393.00 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 230 | 393.08 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 247 | 393.25 | wind | 1.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 248 | 393.26 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 274 | 393.44 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 9 | 9 |
| 277 | 393.47 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 280 | 393.53 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 284 | 393.55 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 285 | 393.57 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 291 | 393.58 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 8 |
| 300 | 393.67 | wind | 1.0 | 720 | < th | dose independent | rect. | 10 | 5 |
| 327 | 393.81 | wind | 1.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 337 | 393.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 19 |
| 338 | 393.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 343 | 393.88 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 345 | 393.92 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 349 | 393.95 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 353 | 393.95 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 364 | 393.97 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 375 | 394.01 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 377 | 394.01 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 380 | 394.01 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 381 | 394.01 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 382 | 394.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 7 | 5 |
| 383 | 394.01 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 386 | 394.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 423 | 394.13 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 427 | 394.14 | wind | 1.0 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 471 | 394.23 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 23 |
| 478 | 394.26 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 481 | 394.26 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 482 | 394.26 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 486 | 394.27 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 507 | 394.35 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 4 | 8 |
| 509 | 394.35 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 2 | 9 |
| 521 | 394.38 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 522 | 394.39 | wind | 1.0 | 90 | > th | dose independent | rect. | 2 | 5 |
| 528 | 394.40 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 534 | 394.41 | temperature | 30.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 560 | 394.45 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 563 | 394.45 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 13 |
| 577 | 394.47 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 588 | 394.50 | wind | 5.0 | 10 | < th | dose independent | rect. | 12 | 4 |
| 604 | 394.53 | wind | 5.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 609 | 394.54 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 616 | 394.56 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 4 | 12 |
| 625 | 394.57 | wind | 9.0 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 642 | 394.61 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 0 | NA |
| 679 | 394.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 688 | 394.69 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 692 | 394.70 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 3 | NA |
| 717 | 394.76 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 725 | 394.78 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 730 | 394.79 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 2 | 12 |
| 737 | 394.80 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 4 | 10 |
| 750 | 394.83 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 2 | NA |
| 751 | 394.83 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 2 | NA |
| 792 | 394.90 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 0 | NA |
| 793 | 394.90 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 3 | NA |
| 794 | 394.90 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 797 | 394.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 834 | 394.97 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 855 | 395.01 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 6 | 14 |
| 861 | 395.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 863 | 395.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 865 | 395.03 | radiation | 10.0 | 10 | < th | dose independent | sin | 6 | NA |
| 881 | 395.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 902 | 395.10 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 908 | 395.11 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 961 | 395.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 16 |
| 995 | 395.24 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |