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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0558200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0463) R2 : 0.621
β1 : -2.04 (0.167) R2dD : 0.133 R2D : 0.19
β2 : 1.92 (0.106) R2dC : 0.266 R2C : 0.254
β3 : 1.89 (0.176) R2dE : 0.121 R2E : 0.028
β4 : -2.81 (0.406) R2dD*C : 0.0403 R2D*C : 0.0399
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.864 (0.109) R2dN8 : 0.0901 R2N8 : 0.0298
σ : 0.838
deviance : 324.02
__
_____
C
peak time of C : 12.4
E
wheather : radiation
threshold : 2.74
memory length : 13638
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.52 0.831 3.94 -2.66 2.02 2.14 -2.43 3.75 0.734 12.2 1.86 13517 -- --
324.02 0.838 3.93 -2.04 1.92 1.89 -2.81 -- 0.864 12.4 2.74 13638 -- --
334.3 0.852 3.93 -2.88 2.14 2 -- 3.95 0.707 12 1.88 13356 -- --
356.84 0.88 3.89 -2.07 1.97 2.04 -- -- 0.918 12.3 2.514 13641 -- --
456.97 1 4.04 -2.49 -- -1.23 -- 2.49 0.283 -- 1.879 12633 -- --
398.97 0.936 3.98 -2.33 1.92 -- -2.57 -- 0.372 11.6 -- -- -- --
427.1 0.968 3.98 -2.44 1.93 -- -- -- 0.36 11.4 -- -- -- --
496.98 1.04 4.04 -2.49 -- -1.21 -- -- 0.292 -- 1.879 12633 -- --
365.57 0.891 3.73 -- 1.9 2.55 -- -- 1.5 11.9 0.8102 46774 -- --
660.73 1.2 4.03 -2.49 -- -- -- -- 0.34 -- -- -- -- --
584.04 1.13 3.92 -- 1.96 -- -- -- 0.632 11.5 -- -- -- --
588.62 1.13 3.77 -- -- 2.49 -- -- 1.49 -- 1.024 47520 -- --
824.31 1.34 3.96 -- -- -- -- -- 0.617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.25 precipitation 0.1 43200 > th dose independent rect. 17 15
2 314.30 precipitation 0.1 43200 < th dose independent rect. 17 15
3 314.30 precipitation 0.1 43200 < th dose dependent rect. 17 15
22 315.02 precipitation 0.1 43200 > th dose independent rect. 19 13
27 315.04 precipitation 0.1 43200 < th dose independent rect. 19 14
28 315.04 precipitation 0.1 43200 < th dose dependent rect. 19 14
72 315.67 precipitation 0.1 43200 > th dose independent rect. 13 19
75 315.75 precipitation 0.1 43200 > th dose dependent sin 10 NA
78 315.77 precipitation 0.1 43200 > th dose dependent rect. 19 14
108 316.10 precipitation 0.1 43200 > th dose independent sin 10 NA
115 316.13 precipitation 0.1 43200 < th dose independent sin 10 NA
116 316.13 precipitation 0.1 43200 < th dose dependent sin 10 NA
122 316.17 humidity 90.0 43200 > th dose independent rect. 22 1
180 316.53 humidity 90.0 43200 > th dose independent rect. 21 3
190 316.62 precipitation 0.1 43200 > th dose independent rect. 2 19
191 316.62 precipitation 0.1 43200 > th dose dependent rect. 19 19
192 316.64 precipitation 0.1 43200 < th dose independent rect. 2 19
194 316.64 precipitation 0.1 43200 < th dose dependent rect. 2 19
213 316.83 precipitation 0.1 43200 < th dose independent rect. 17 10
214 316.83 precipitation 0.1 43200 < th dose dependent rect. 17 10
225 316.90 precipitation 0.1 43200 > th dose independent rect. 23 22
231 316.91 precipitation 0.1 43200 > th dose dependent rect. 22 20
237 316.93 precipitation 0.1 43200 < th dose independent rect. 22 23
238 316.93 precipitation 0.1 43200 < th dose dependent rect. 22 23
239 316.94 precipitation 0.1 43200 > th dose independent rect. 17 10
255 316.99 precipitation 0.1 43200 > th dose dependent sin 3 NA
259 317.02 precipitation 0.1 43200 < th dose independent rect. 2 22
261 317.02 precipitation 0.1 43200 < th dose dependent rect. 2 22
264 317.04 precipitation 0.1 43200 > th dose independent rect. 2 22
277 317.12 precipitation 0.1 43200 > th dose independent rect. 2 16
291 317.17 precipitation 0.1 43200 > th dose dependent rect. 17 21
292 317.18 precipitation 0.1 43200 < th dose independent rect. 2 16
293 317.18 precipitation 0.1 43200 < th dose dependent rect. 2 16
309 317.26 precipitation 0.1 43200 < th dose independent rect. 19 23
310 317.26 precipitation 0.1 43200 < th dose dependent rect. 19 23
317 317.28 precipitation 0.1 43200 > th dose independent rect. 19 23
350 317.46 humidity 90.0 43200 > th dose dependent rect. 21 3
352 317.47 precipitation 0.1 43200 < th dose independent rect. 19 19
359 317.47 precipitation 0.1 43200 < th dose dependent rect. 19 19
367 317.49 precipitation 0.1 43200 < th dose independent rect. 19 5
372 317.49 precipitation 0.1 43200 < th dose dependent rect. 19 5
377 317.50 precipitation 0.1 43200 > th dose independent rect. 19 19
410 317.58 humidity 90.0 43200 > th dose dependent rect. 22 1
421 317.61 precipitation 0.1 43200 > th dose dependent rect. 13 22
428 317.63 precipitation 0.1 43200 > th dose independent rect. 23 19
450 317.72 precipitation 0.1 43200 > th dose independent rect. 19 5
452 317.72 precipitation 0.1 43200 < th dose independent rect. 23 19
455 317.72 precipitation 0.1 43200 < th dose dependent rect. 23 19
474 317.76 precipitation 0.1 43200 > th dose dependent rect. 9 23
475 317.77 humidity 90.0 43200 < th dose independent rect. 18 1
487 317.78 precipitation 0.1 43200 > th dose dependent rect. 19 23
496 317.80 precipitation 0.1 43200 > th dose dependent no NA NA
512 317.84 precipitation 0.1 43200 > th dose independent no NA NA
513 317.84 precipitation 0.1 43200 < th dose independent no NA NA
514 317.84 precipitation 0.1 43200 < th dose dependent no NA NA
540 317.92 precipitation 0.1 43200 > th dose dependent rect. 1 23
563 318.00 humidity 90.0 43200 < th dose independent rect. 21 1
608 318.14 humidity 90.0 43200 < th dose independent rect. 17 6
611 318.14 precipitation 0.1 43200 > th dose dependent rect. 3 11
634 318.18 precipitation 0.1 43200 < th dose independent rect. 5 23
637 318.18 precipitation 0.1 43200 < th dose dependent rect. 5 23
640 318.19 precipitation 0.1 43200 > th dose independent rect. 5 23
648 318.21 precipitation 0.1 43200 > th dose dependent rect. 5 23
728 318.47 precipitation 0.1 43200 > th dose independent rect. 3 11
729 318.47 precipitation 0.1 43200 > th dose dependent rect. 22 16
755 318.55 precipitation 0.1 43200 < th dose independent rect. 3 11
759 318.55 precipitation 0.1 43200 < th dose dependent rect. 3 11
766 318.56 precipitation 0.1 43200 > th dose dependent rect. 2 15
810 318.67 radiation 1.0 14400 < th dose independent rect. 2 5
817 318.68 radiation 1.0 14400 > th dose independent rect. 4 3
838 318.71 precipitation 0.1 43200 > th dose dependent rect. 19 8
874 318.82 precipitation 0.1 43200 > th dose dependent rect. 1 13
931 319.02 precipitation 0.1 43200 < th dose independent rect. 3 9
937 319.02 precipitation 0.1 43200 < th dose dependent rect. 3 9
969 319.11 precipitation 0.1 43200 > th dose independent rect. 3 9