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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0556700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0412) R2 : 0.241
β1 : 1.28 (0.149) R2dD : 0.128 R2D : 0.139
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.63 (0.214) R2dE : 0.11 R2E : 0.117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.0918) R2dN8 : 0.00382 R2N8 : -0.0165
σ : 0.761
deviance : 266.69
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 84
memory length : 5355
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.36 0.758 4.17 1.18 0.22 -1.42 0.348 -1.61 0.079 9.69 84.76 5437 -- --
263.76 0.756 4.17 1.26 0.203 -1.54 0.47 -- 0.102 9.7 84 5398 -- --
260.74 0.752 4.17 1.19 0.216 -1.4 -- -1.63 0.0646 10.2 84.03 5407 -- --
264.53 0.758 4.17 1.28 0.202 -1.52 -- -- 0.1 10.5 84 5400 -- --
263.08 0.755 4.17 1.2 -- -1.52 -- -1.67 0.0966 -- 84.6 5355 -- --
293.15 0.803 4.22 1.29 0.336 -- 0.463 -- -0.116 10.6 -- -- -- --
294.01 0.803 4.22 1.31 0.333 -- -- -- -0.114 10.8 -- -- -- --
266.69 0.761 4.17 1.28 -- -1.63 -- -- 0.113 -- 84 5355 -- --
301.28 0.808 4.17 -- 0.264 -1.68 -- -- 0.0928 9.74 94 6965 -- --
300.88 0.811 4.23 1.31 -- -- -- -- -0.116 -- -- -- -- --
339.37 0.862 4.25 -- 0.324 -- -- -- -0.26 10.5 -- -- -- --
304.31 0.812 4.18 -- -- -1.82 -- -- 0.096 -- 94 6716 -- --
345.81 0.868 4.26 -- -- -- -- -- -0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 258.74 wind 7.0 4320 < th dose independent rect. 22 4
3 260.17 precipitation 0.1 14400 < th dose independent rect. 4 15
4 260.17 precipitation 0.1 14400 < th dose dependent rect. 4 15
5 260.21 precipitation 0.1 14400 > th dose independent rect. 4 15
6 260.29 wind 7.0 4320 > th dose dependent rect. 22 3
7 260.41 precipitation 0.1 14400 > th dose dependent rect. 2 17
11 260.56 precipitation 0.1 4320 > th dose dependent rect. 19 1
13 260.61 humidity 70.0 4320 < th dose independent rect. 15 1
14 260.63 precipitation 0.1 4320 > th dose independent rect. 19 1
16 260.92 humidity 80.0 4320 < th dose dependent rect. 15 1
17 260.96 wind 7.0 4320 < th dose independent rect. 21 6
29 261.39 precipitation 0.1 14400 < th dose independent rect. 16 1
30 261.39 precipitation 0.1 14400 < th dose dependent rect. 16 1
32 261.56 humidity 70.0 4320 > th dose independent rect. 15 2
46 261.83 precipitation 0.1 14400 > th dose independent rect. 16 1
54 261.93 precipitation 0.1 4320 < th dose independent rect. 19 1
56 261.93 precipitation 0.1 4320 < th dose dependent rect. 19 1
58 262.01 radiation 1.0 1440 > th dose dependent rect. 7 4
64 262.15 precipitation 0.1 14400 > th dose dependent sin 1 NA
65 262.18 wind 7.0 4320 > th dose independent rect. 22 4
72 262.24 radiation 40.0 1440 < th dose dependent rect. 8 2
77 262.31 radiation 40.0 1440 < th dose dependent rect. 7 4
91 262.45 precipitation 0.1 14400 > th dose dependent rect. 16 1
97 262.51 precipitation 0.1 14400 > th dose dependent rect. 16 20
110 262.63 precipitation 0.1 14400 > th dose independent rect. 16 3
118 262.70 precipitation 0.1 14400 < th dose independent sin 0 NA
119 262.70 precipitation 0.1 14400 < th dose dependent sin 0 NA
121 262.71 precipitation 0.1 14400 > th dose independent sin 0 NA
165 262.97 precipitation 0.1 14400 < th dose independent rect. 8 11
166 262.97 precipitation 0.1 14400 < th dose dependent rect. 8 11
167 262.98 precipitation 0.1 14400 > th dose independent rect. 8 11
171 263.02 radiation 30.0 1440 < th dose independent rect. 8 3
239 263.46 radiation 40.0 1440 < th dose dependent rect. 24 11
241 263.47 radiation 40.0 1440 < th dose dependent rect. 2 9
245 263.48 radiation 40.0 1440 < th dose dependent rect. 21 14
283 263.65 precipitation 0.1 14400 > th dose dependent no NA NA
290 263.71 precipitation 0.1 14400 > th dose dependent rect. 8 23
361 264.04 radiation 30.0 1440 < th dose independent rect. 16 19
362 264.04 precipitation 0.1 14400 < th dose independent rect. 16 21
364 264.04 precipitation 0.1 14400 < th dose dependent rect. 16 21
383 264.09 precipitation 0.1 14400 > th dose independent rect. 16 21
387 264.09 precipitation 0.1 14400 > th dose dependent rect. 8 12
428 264.34 humidity 70.0 4320 < th dose independent rect. 8 10
434 264.37 radiation 30.0 1440 < th dose independent rect. 24 11
439 264.39 radiation 30.0 1440 < th dose independent rect. 2 9
440 264.39 radiation 30.0 1440 < th dose independent rect. 21 14
514 264.51 humidity 70.0 1440 < th dose independent rect. 10 2
582 264.71 radiation 20.0 1440 > th dose dependent sin 9 NA
622 264.81 humidity 70.0 4320 > th dose independent rect. 8 10
650 264.88 radiation 40.0 1440 < th dose independent rect. 16 21
668 264.93 humidity 70.0 1440 > th dose independent rect. 10 2
717 265.11 radiation 1.0 1440 > th dose dependent sin 9 NA
723 265.14 radiation 40.0 1440 > th dose independent sin 11 NA
738 265.16 radiation 30.0 1440 > th dose independent rect. 8 3
739 265.17 precipitation 0.1 14400 > th dose independent no NA NA
740 265.17 precipitation 0.1 14400 < th dose independent no NA NA
745 265.17 precipitation 0.1 14400 < th dose dependent no NA NA
765 265.22 precipitation 0.1 14400 > th dose independent rect. 8 23
766 265.22 precipitation 0.1 14400 < th dose independent rect. 8 23
768 265.22 precipitation 0.1 14400 < th dose dependent rect. 8 23
771 265.23 humidity 70.0 4320 > th dose independent rect. 24 18
783 265.25 humidity 70.0 4320 < th dose independent sin 22 NA
792 265.26 humidity 60.0 4320 > th dose dependent rect. 3 8
836 265.38 humidity 70.0 4320 < th dose independent rect. 12 22
838 265.38 precipitation 0.1 14400 < th dose independent rect. 11 23
842 265.38 precipitation 0.1 14400 < th dose dependent rect. 11 23
853 265.39 radiation 40.0 720 < th dose independent rect. 22 23
856 265.40 radiation 30.0 1440 > th dose independent rect. 16 19
860 265.41 precipitation 0.1 14400 > th dose independent rect. 11 23
864 265.42 humidity 50.0 4320 > th dose dependent rect. 2 16
918 265.48 humidity 50.0 4320 > th dose dependent rect. 22 20