Os10g0556600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0556600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.84 | 0.672 | 4.55 | -0.0419 | 2.46 | 4.26 | -0.739 | -2.96 | 0.329 | 18.3 | 0.8199 | 868 | -- | -- |
| 206.89 | 0.67 | 4.58 | -0.131 | 2.65 | 4.67 | 1.07 | -- | 0.345 | 18.8 | 1.08 | 917 | -- | -- |
| 204.63 | 0.666 | 4.56 | -0.0424 | 2.43 | 4.27 | -- | -2 | 0.332 | 18.5 | 0.8006 | 887 | -- | -- |
| 209.08 | 0.673 | 4.58 | -0.114 | 2.44 | 4.46 | -- | -- | 0.31 | 18.8 | 0.9095 | 921 | -- | -- |
| 251.82 | 0.739 | 4.4 | 0.688 | -- | 3.49 | -- | -1.36 | 0.781 | -- | 0.5486 | 1308 | -- | -- |
| 249.97 | 0.741 | 4.54 | -0.539 | 0.678 | -- | -0.0324 | -- | 0.0933 | 8.95 | -- | -- | -- | -- |
| 249.97 | 0.74 | 4.54 | -0.54 | 0.678 | -- | -- | -- | 0.0934 | 8.97 | -- | -- | -- | -- |
| 217.49 | 0.687 | 4.51 | -0.14 | -- | 2.17 | -- | -- | 0.32 | -- | 0.3408 | 1296 | -- | -- |
| 209.47 | 0.674 | 4.57 | -- | 2.39 | 4.38 | -- | -- | 0.34 | 18.9 | 0.9 | 925 | -- | -- |
| 276.33 | 0.777 | 4.56 | -0.54 | -- | -- | -- | -- | 0.0978 | -- | -- | -- | -- | -- |
| 257.65 | 0.751 | 4.53 | -- | 0.677 | -- | -- | -- | 0.153 | 9.03 | -- | -- | -- | -- |
| 217.34 | 0.687 | 4.51 | -- | -- | 2.19 | -- | -- | 0.336 | -- | 0.45 | 1296 | -- | -- |
| 284.03 | 0.787 | 4.55 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 2 | 202.03 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 18 |
| 4 | 203.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 8 | 203.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 15 | 204.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 19 | 205.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 42 | 205.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 46 | 205.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 48 | 205.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 69 | 205.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 78 | 205.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 87 | 205.47 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 91 | 205.56 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 120 | 205.82 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 124 | 205.87 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 129 | 205.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 139 | 206.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 140 | 206.21 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 155 | 206.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 220 | 206.55 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 225 | 206.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 230 | 206.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 352 | 207.69 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 14 |
| 510 | 208.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 576 | 209.56 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 626 | 210.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 674 | 210.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 721 | 211.35 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 22 |
| 728 | 211.43 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 754 | 211.82 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 756 | 211.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 780 | 211.94 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 802 | 212.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 818 | 212.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 834 | 212.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 853 | 212.75 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 887 | 212.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 889 | 212.80 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 935 | 212.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 953 | 212.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 964 | 213.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |