Os10g0555200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Holliday junction resolvase YqgF family protein.
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Os10g0555200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Holliday junction resolvase YqgF family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.78 | 0.375 | 11.4 | -0.65 | 1.37 | -0.455 | -0.92 | -0.256 | -0.565 | 21.3 | 24.6 | 290 | -- | -- |
| 63.98 | 0.373 | 11.5 | -0.728 | 1.37 | -0.47 | -0.884 | -- | -0.593 | 21.4 | 24.6 | 283 | -- | -- |
| 66.78 | 0.381 | 11.4 | -0.633 | 1.39 | -0.457 | -- | -0.215 | -0.565 | 21.3 | 24.47 | 274 | -- | -- |
| 66.91 | 0.381 | 11.4 | -0.7 | 1.37 | -0.471 | -- | -- | -0.595 | 21.4 | 24.59 | 283 | -- | -- |
| 140.37 | 0.552 | 11.4 | -0.778 | -- | -1.1 | -- | 0.843 | -0.741 | -- | 25.2 | 593 | -- | -- |
| 75.96 | 0.409 | 11.4 | -0.575 | 1.5 | -- | -0.915 | -- | -0.356 | 20.8 | -- | -- | -- | -- |
| 78.76 | 0.416 | 11.4 | -0.545 | 1.5 | -- | -- | -- | -0.356 | 20.8 | -- | -- | -- | -- |
| 139.22 | 0.55 | 11.5 | -0.883 | -- | -1.15 | -- | -- | -0.8 | -- | 25.2 | 588 | -- | -- |
| 79.19 | 0.414 | 11.4 | -- | 1.39 | -0.367 | -- | -- | -0.465 | 21.2 | 24.69 | 283 | -- | -- |
| 206.16 | 0.671 | 11.4 | -0.547 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 86.59 | 0.435 | 11.4 | -- | 1.5 | -- | -- | -- | -0.295 | 20.7 | -- | -- | -- | -- |
| 158.83 | 0.587 | 11.4 | -- | -- | -1.02 | -- | -- | -0.661 | -- | 25.2 | 580 | -- | -- |
| 214.05 | 0.683 | 11.3 | -- | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.60 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 11 | 55.85 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 17 | 56.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 23 | 57.16 | radiation | 1.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 39 | 57.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 45 | 58.02 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 47 | 58.10 | radiation | 1.0 | 30 | > th | dose independent | sin | 8 | NA |
| 48 | 58.12 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 50 | 58.15 | radiation | 1.0 | 30 | < th | dose independent | sin | 8 | NA |
| 56 | 58.19 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 59 | 58.24 | wind | 5.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 72 | 58.42 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 85 | 58.57 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 88 | 58.64 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 107 | 58.91 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 17 |
| 108 | 58.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 110 | 58.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 117 | 58.99 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 125 | 59.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 129 | 59.12 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 135 | 59.18 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 145 | 59.30 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 163 | 59.47 | wind | 9.0 | 10 | < th | dose dependent | rect. | 22 | 7 |
| 164 | 59.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 169 | 59.51 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 190 | 59.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 191 | 59.69 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 194 | 59.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 195 | 59.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 197 | 59.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 201 | 59.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 203 | 59.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 205 | 59.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 206 | 59.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 209 | 59.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 210 | 59.76 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 211 | 59.76 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 214 | 59.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 215 | 59.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 216 | 59.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 217 | 59.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 220 | 59.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 221 | 59.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 226 | 59.81 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 231 | 59.83 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 233 | 59.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 236 | 59.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 238 | 59.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 239 | 59.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 240 | 59.84 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 241 | 59.84 | wind | 7.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 243 | 59.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 259 | 59.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 260 | 59.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 262 | 59.94 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 267 | 59.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 273 | 59.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 274 | 59.96 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 275 | 59.96 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 278 | 59.96 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 279 | 59.96 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 283 | 59.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 287 | 59.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 289 | 59.97 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 290 | 59.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 292 | 59.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 293 | 59.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 294 | 59.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 297 | 59.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 298 | 59.98 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 303 | 59.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 305 | 59.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 318 | 59.99 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 328 | 60.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 331 | 60.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 337 | 60.09 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 350 | 60.14 | radiation | 1.0 | 10 | < th | dose independent | rect. | 22 | 8 |
| 359 | 60.18 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 363 | 60.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 366 | 60.21 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 368 | 60.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 369 | 60.21 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 383 | 60.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 386 | 60.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 6 |
| 390 | 60.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 398 | 60.27 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 400 | 60.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 403 | 60.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 405 | 60.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 406 | 60.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 415 | 60.31 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 423 | 60.32 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 471 | 60.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 474 | 60.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 488 | 60.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 505 | 60.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 584 | 60.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 607 | 60.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 610 | 60.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 619 | 60.59 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 657 | 60.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 665 | 60.63 | wind | 5.0 | 30 | < th | dose independent | rect. | 13 | 16 |
| 694 | 60.66 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 17 |
| 695 | 60.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 701 | 60.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 744 | 60.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 746 | 60.69 | wind | 9.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 759 | 60.71 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 16 |
| 792 | 60.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 794 | 60.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 820 | 60.80 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 824 | 60.80 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 7 |
| 845 | 60.85 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 17 |
| 846 | 60.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 855 | 60.85 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 860 | 60.86 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 900 | 60.92 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 906 | 60.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 907 | 60.93 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 908 | 60.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 929 | 60.98 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 934 | 60.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 954 | 61.02 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 956 | 61.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 999 | 61.08 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |