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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0555100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA chromosome 4, ESSA I CONTIG fragment NO. 6 (Glucosyltransferase like protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.78 (0.0326) R2 : 0.627
β1 : 0.931 (0.119) R2dD : 0.053 R2D : 0.0433
β2 : 2.21 (0.0843) R2dC : 0.632 R2C : 0.456
β3 : 1.13 (0.0972) R2dE : 0.12 R2E : -0.0551
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.23 (0.0695) R2dN8 : 0.012 R2N8 : -0.00754
σ : 0.611
deviance : 169.76
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_____
C
peak time of C : 21.2
E
wheather : humidity
threshold : 62.54
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.32
open length of G : 15.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.3 0.611 8.78 0.94 2.24 1.11 0.555 0.615 0.219 21.3 61.55 23 5.22 15.4
169.19 0.61 8.78 0.945 2.21 1.13 0.4 -- 0.23 21.2 62.54 13 5.32 15.4
170.02 0.612 8.78 0.914 2.21 1.1 -- 0.396 0.228 21.2 62.55 23 5.23 15.4
169.76 0.611 8.78 0.931 2.21 1.13 -- -- 0.23 21.2 62.54 13 5.32 15.4
239.86 0.721 8.87 1.63 -- 2.59 -- 0.494 0.0074 -- 22.28 801 9.93 9.35
219.26 0.694 8.78 0.923 1.93 -- 0.46 -- 0.183 21.1 -- -- -- --
219.99 0.695 8.78 0.907 1.93 -- -- -- 0.182 21.1 -- -- -- --
212.88 0.68 8.73 0.933 -- 2.24 -- -- 0.177 -- -10.29 749 11 7.7
192.58 0.65 8.8 -- 2.21 1.11 -- -- 0.126 21.3 62.54 13 5.32 15.4
434.78 0.974 8.73 0.911 -- -- -- -- 0.171 -- -- -- -- --
241.67 0.727 8.8 -- 1.93 -- -- -- 0.0813 21.1 -- -- -- --
232.6 0.71 8.75 -- -- 2.55 -- -- 0.117 -- -12.87 932 9.97 8.03
456.67 0.997 8.75 -- -- -- -- -- 0.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.40 humidity 60.0 30 > th dose dependent rect. 5 15
2 170.75 wind 5.0 90 < th dose independent rect. 8 21
7 172.42 humidity 90.0 10 < th dose dependent rect. 8 6
17 174.15 humidity 80.0 30 > th dose independent rect. 5 15
21 174.61 radiation 20.0 90 < th dose dependent rect. 5 13
23 174.94 radiation 40.0 30 < th dose dependent rect. 5 15
30 175.26 humidity 80.0 10 < th dose independent rect. 8 6
33 175.38 wind 7.0 270 < th dose independent rect. 17 10
37 175.47 humidity 60.0 10 > th dose dependent sin 1 NA
38 175.48 radiation 10.0 90 > th dose independent rect. 8 6
39 175.51 radiation 20.0 30 < th dose independent rect. 5 15
41 175.51 temperature 30.0 30 < th dose dependent rect. 5 15
55 175.99 humidity 90.0 10 < th dose dependent rect. 20 18
56 176.00 temperature 10.0 10 > th dose dependent rect. 8 17
72 176.68 wind 5.0 270 < th dose independent rect. 18 19
74 176.75 temperature 25.0 30 > th dose independent rect. 8 21
83 176.94 humidity 90.0 10 < th dose dependent sin 2 NA
88 176.99 radiation 10.0 10 > th dose independent rect. 8 9
123 177.66 wind 7.0 270 < th dose independent rect. 8 14
127 177.71 humidity 90.0 10 < th dose dependent rect. 3 11
130 177.73 radiation 10.0 270 > th dose independent rect. 16 21
136 177.85 wind 9.0 270 < th dose dependent rect. 7 6
152 178.14 temperature 10.0 90 > th dose dependent rect. 8 6
162 178.31 temperature 15.0 10 > th dose dependent rect. 8 6
172 178.41 radiation 10.0 10 > th dose independent rect. 8 6
183 178.46 radiation 10.0 270 > th dose independent rect. 6 7
213 178.55 temperature 10.0 30 > th dose dependent rect. 8 21
222 178.65 radiation 20.0 10 < th dose dependent sin 23 NA
243 178.88 temperature 25.0 30 > th dose independent rect. 8 17
250 179.00 precipitation 0.1 270 < th dose independent rect. 17 10
252 179.00 precipitation 0.1 270 < th dose dependent rect. 17 10
262 179.11 wind 5.0 270 < th dose independent rect. 7 6
279 179.32 wind 9.0 90 < th dose dependent rect. 8 21
284 179.37 radiation 10.0 270 < th dose dependent rect. 3 15
288 179.43 precipitation 0.1 270 < th dose independent rect. 8 14
289 179.43 wind 9.0 270 < th dose dependent rect. 8 14
290 179.43 precipitation 0.1 270 < th dose dependent rect. 8 14
298 179.52 radiation 40.0 90 < th dose dependent rect. 13 20
313 179.70 temperature 25.0 30 < th dose independent rect. 5 16
377 180.09 wind 9.0 270 < th dose dependent rect. 18 18
397 180.33 humidity 50.0 270 > th dose independent rect. 13 18
415 180.45 radiation 40.0 90 < th dose independent rect. 5 15
434 180.60 temperature 15.0 270 > th dose independent rect. 7 6
435 180.60 humidity 60.0 10 > th dose dependent rect. 1 19
442 180.64 wind 9.0 270 < th dose dependent rect. 7 19
463 180.77 radiation 10.0 270 < th dose dependent sin 4 NA
501 180.92 humidity 60.0 90 > th dose dependent rect. 1 18
505 180.94 temperature 10.0 10 > th dose dependent rect. 20 18
529 181.13 radiation 10.0 90 > th dose independent sin 1 NA
601 181.55 temperature 10.0 270 > th dose dependent rect. 18 19
622 181.60 humidity 80.0 90 > th dose independent rect. 1 18
632 181.69 humidity 90.0 270 < th dose independent rect. 8 3
644 181.75 precipitation 0.1 270 < th dose independent rect. 16 23
645 181.75 precipitation 0.1 270 < th dose dependent rect. 16 23
684 181.98 humidity 80.0 30 < th dose independent sin 1 NA
686 181.98 radiation 40.0 270 < th dose independent rect. 11 20
735 182.28 radiation 40.0 90 < th dose independent rect. 13 19
745 182.34 radiation 10.0 10 > th dose independent sin 23 NA
756 182.38 humidity 50.0 10 > th dose dependent rect. 13 7
758 182.39 temperature 30.0 10 < th dose dependent rect. 12 8
779 182.50 radiation 1.0 90 > th dose dependent rect. 8 6
780 182.50 temperature 30.0 10 < th dose dependent rect. 2 18
785 182.53 radiation 10.0 270 > th dose independent sin 6 NA
815 182.63 radiation 10.0 270 < th dose dependent rect. 22 20
825 182.67 humidity 80.0 30 > th dose independent sin 1 NA
836 182.72 humidity 50.0 270 > th dose independent rect. 13 5
838 182.72 precipitation 0.1 270 < th dose independent rect. 7 6
839 182.72 precipitation 0.1 270 < th dose dependent rect. 7 6
842 182.73 radiation 1.0 270 < th dose independent rect. 3 15
859 182.78 radiation 40.0 10 < th dose dependent rect. 12 8
888 182.91 atmosphere 995.0 270 > th dose independent rect. 13 18
910 182.97 atmosphere 995.0 270 > th dose independent rect. 7 6
911 182.97 atmosphere 1015.0 270 < th dose independent rect. 7 6
912 182.97 temperature 10.0 270 > th dose independent rect. 13 18
926 183.02 wind 7.0 10 < th dose independent rect. 20 18
960 183.17 temperature 25.0 30 > th dose independent rect. 8 6
962 183.18 humidity 80.0 90 > th dose independent sin 3 NA
994 183.24 radiation 40.0 90 < th dose dependent rect. 15 18
1000 183.26 radiation 20.0 270 < th dose independent rect. 22 10