Os10g0552400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os10g0552400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.77 | 0.565 | 10.9 | 2.64 | 2.16 | -3.14 | -0.435 | 3.17 | 0.531 | 5.58 | 0.009357 | 756 | -- | -- |
| 147.09 | 0.565 | 10.9 | 2.76 | 2.1 | -3.08 | 1.86 | -- | 0.541 | 5.61 | 0.0001157 | 757 | -- | -- |
| 144.13 | 0.559 | 10.9 | 2.64 | 2.21 | -3.27 | -- | 2.61 | 0.516 | 5.67 | 8.469e-08 | 766 | -- | -- |
| 155.08 | 0.58 | 10.9 | 2.74 | 2.25 | -3.3 | -- | -- | 0.529 | 5.69 | 1.847e-08 | 766 | -- | -- |
| 167.15 | 0.602 | 10.9 | 2.23 | -- | -2.04 | -- | 2.22 | 0.532 | -- | 1.284e-07 | 1318 | -- | -- |
| 177.24 | 0.624 | 10.9 | 3.12 | 0.269 | -- | -1.43 | -- | 0.692 | 18.4 | -- | -- | -- | -- |
| 179.91 | 0.628 | 10.9 | 3.13 | 0.325 | -- | -- | -- | 0.684 | 20.9 | -- | -- | -- | -- |
| 154.86 | 0.58 | 10.9 | 2.7 | -- | -1.62 | -- | -- | 0.532 | -- | 3.534e-05 | 1345 | -- | -- |
| 328.98 | 0.845 | 10.9 | -- | 4.06 | -5.64 | -- | -- | 0.0672 | 5.85 | 0.01 | 763 | -- | -- |
| 185.93 | 0.637 | 10.9 | 3.13 | -- | -- | -- | -- | 0.682 | -- | -- | -- | -- | -- |
| 437.61 | 0.979 | 11 | -- | 0.324 | -- | -- | -- | 0.336 | 21.6 | -- | -- | -- | -- |
| 269.3 | 0.764 | 10.9 | -- | -- | -2.07 | -- | -- | 0.522 | -- | 0.00982 | 42746 | -- | -- |
| 443.83 | 0.983 | 11 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 2 | 145.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 3 | 145.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 4 | 146.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 5 | 146.20 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 13 |
| 6 | 146.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 10 | 146.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 13 | 146.58 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 14 | 146.62 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 17 | 146.72 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 21 | 147.07 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 20 |
| 29 | 147.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 30 | 147.49 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 33 | 147.77 | wind | 7 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 36 | 147.90 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 37 | 147.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 38 | 147.93 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 41 | 148.06 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 16 |
| 42 | 148.07 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 17 |
| 46 | 148.18 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 49 | 148.21 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 55 | 148.31 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 59 | 148.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 61 | 148.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 83 | 148.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 87 | 148.83 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 92 | 148.89 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 99 | 149.03 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 100 | 149.03 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 110 | 149.14 | wind | 7 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 120 | 149.24 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 132 | 149.34 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 134 | 149.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 135 | 149.35 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 144 | 149.42 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 154 | 149.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 160 | 149.50 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 162 | 149.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 163 | 149.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 168 | 149.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 170 | 149.55 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 177 | 149.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 178 | 149.57 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 179 | 149.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 181 | 149.58 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 187 | 149.60 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 221 | 149.72 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 226 | 149.73 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 244 | 149.78 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 253 | 149.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 254 | 149.82 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 267 | 149.87 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 272 | 149.88 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 277 | 149.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 317 | 149.99 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 412 | 150.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 428 | 150.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 547 | 150.32 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 570 | 150.36 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 576 | 150.37 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 628 | 150.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 635 | 150.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 721 | 150.59 | wind | 7 | 14400 | > th | dose dependent | sin | 3 | NA |
| 731 | 150.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 780 | 150.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 828 | 150.74 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 22 |