Os10g0551600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0551600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.06 | 0.205 | 11.7 | -0.44 | 0.101 | 0.879 | 0.111 | 0.249 | -0.243 | 10.4 | 22.92 | 121 | -- | -- |
| 19.1 | 0.204 | 11.7 | -0.479 | 0.102 | 0.897 | 0.131 | -- | -0.252 | 10.3 | 22.98 | 122 | -- | -- |
| 19.11 | 0.204 | 11.7 | -0.429 | 0.101 | 0.878 | -- | 0.305 | -0.24 | 10.3 | 22.93 | 121 | -- | -- |
| 19.17 | 0.204 | 11.7 | -0.475 | 0.101 | 0.906 | -- | -- | -0.254 | 10.1 | 23 | 121 | -- | -- |
| 19.3 | 0.206 | 11.7 | -0.42 | -- | 0.918 | -- | 0.371 | -0.249 | -- | 22.93 | 121 | -- | -- |
| 32.32 | 0.267 | 11.7 | -0.305 | 0.395 | -- | 0.4 | -- | -0.125 | 14.8 | -- | -- | -- | -- |
| 32.87 | 0.268 | 11.7 | -0.295 | 0.396 | -- | -- | -- | -0.123 | 14.8 | -- | -- | -- | -- |
| 19.38 | 0.205 | 11.7 | -0.492 | -- | 0.938 | -- | -- | -0.262 | -- | 22.95 | 54 | -- | -- |
| 24.66 | 0.233 | 11.7 | -- | 0.0844 | 0.791 | -- | -- | -0.178 | 15 | 23.77 | 121 | -- | -- |
| 41.95 | 0.303 | 11.7 | -0.312 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 35.17 | 0.277 | 11.7 | -- | 0.402 | -- | -- | -- | -0.0901 | 14.8 | -- | -- | -- | -- |
| 24.91 | 0.233 | 11.7 | -- | -- | 0.874 | -- | -- | -0.186 | -- | 23.84 | 27 | -- | -- |
| 44.52 | 0.311 | 11.7 | -- | -- | -- | -- | -- | -0.0985 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 4 | 18.84 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 41 | 19.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 64 | 19.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 80 | 19.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 101 | 19.49 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 113 | 19.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 123 | 19.62 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 134 | 19.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 143 | 19.68 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 175 | 19.73 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 235 | 19.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 236 | 19.85 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 244 | 19.86 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 245 | 19.86 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 258 | 19.87 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 275 | 19.89 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 276 | 19.89 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 312 | 19.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 330 | 19.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 350 | 19.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 361 | 20.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 433 | 20.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 441 | 20.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 510 | 20.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 650 | 20.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 732 | 20.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 867 | 20.32 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 936 | 20.35 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 946 | 20.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 947 | 20.36 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 998 | 20.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |