Os10g0548700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0548700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.35 | 0.295 | 10.3 | -0.0628 | 0.623 | 1.35 | 0.66 | -0.897 | 0.296 | 3.78 | 19.45 | 5271 | -- | -- |
| 39.82 | 0.294 | 10.3 | 0.0782 | 0.673 | 1.44 | 0.574 | -- | 0.292 | 3.5 | 16.61 | 6167 | -- | -- |
| 40.52 | 0.296 | 10.3 | -0.0305 | 0.615 | 1.36 | -- | -0.676 | 0.295 | 3.5 | 19.06 | 5375 | -- | -- |
| 40.53 | 0.297 | 10.3 | 0.0992 | 0.607 | 1.44 | -- | -- | 0.338 | 3.44 | 16.94 | 5412 | -- | -- |
| 61.07 | 0.364 | 10.3 | 0.0824 | -- | 1.53 | -- | 0.0344 | 0.327 | -- | 17.1 | 5436 | -- | -- |
| 86.14 | 0.435 | 10.2 | 0.846 | 0.689 | -- | 0.618 | -- | 0.67 | 3.31 | -- | -- | -- | -- |
| 87.31 | 0.438 | 10.2 | 0.834 | 0.69 | -- | -- | -- | 0.667 | 3.15 | -- | -- | -- | -- |
| 57.87 | 0.354 | 10.3 | 0.213 | -- | 1.62 | -- | -- | 0.344 | -- | 15.54 | 2633 | -- | -- |
| 40.69 | 0.297 | 10.3 | -- | 0.607 | 1.5 | -- | -- | 0.314 | 3.45 | 16.78 | 5405 | -- | -- |
| 114.42 | 0.5 | 10.2 | 0.864 | -- | -- | -- | -- | 0.685 | -- | -- | -- | -- | -- |
| 105.65 | 0.481 | 10.3 | -- | 0.706 | -- | -- | -- | 0.574 | 3.15 | -- | -- | -- | -- |
| 58.77 | 0.357 | 10.3 | -- | -- | 1.74 | -- | -- | 0.305 | -- | 13.8 | 2640 | -- | -- |
| 134.09 | 0.54 | 10.3 | -- | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 34.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 16 | 34.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 23 | 35.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 30 | 35.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 76 | 35.97 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 136 | 36.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 177 | 36.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 242 | 36.57 | radiation | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 245 | 36.58 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 246 | 36.58 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 257 | 36.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 258 | 36.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 269 | 36.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 277 | 36.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 324 | 36.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 328 | 36.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 346 | 36.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 354 | 36.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 22 |
| 398 | 36.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 402 | 36.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 406 | 36.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 456 | 36.74 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 656 | 37.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 870 | 37.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 926 | 37.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 927 | 37.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 928 | 37.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 935 | 37.37 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 941 | 37.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 997 | 37.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |