Os10g0548400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0548400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.68 | 0.354 | 10.6 | 1.14 | 0.526 | -0.154 | -0.472 | -6.15 | 0.338 | 22.5 | 31.3 | 3497 | -- | -- |
| 61.36 | 0.365 | 10.5 | 2.02 | 0.49 | -0.603 | -0.572 | -- | 0.359 | 23 | 29.7 | 1391 | -- | -- |
| 57.55 | 0.353 | 10.6 | 1.14 | 0.518 | -0.144 | -- | -6.27 | 0.338 | 22.7 | 31.33 | 3474 | -- | -- |
| 57.73 | 0.354 | 10.5 | 2.06 | 0.538 | -0.714 | -- | -- | 0.331 | 22.9 | 30.5 | 5765 | -- | -- |
| 74.36 | 0.402 | 10.6 | 1.16 | -- | -0.101 | -- | -6.06 | 0.35 | -- | 31.4 | 3219 | -- | -- |
| 82.64 | 0.426 | 10.5 | 1.81 | 0.477 | -- | -0.613 | -- | 0.479 | 22.2 | -- | -- | -- | -- |
| 84.08 | 0.429 | 10.5 | 1.84 | 0.478 | -- | -- | -- | 0.48 | 22.4 | -- | -- | -- | -- |
| 70.4 | 0.391 | 10.5 | 2.06 | -- | -0.742 | -- | -- | 0.402 | -- | 30.33 | 5876 | -- | -- |
| 163.21 | 0.595 | 10.5 | -- | 0.486 | -0.472 | -- | -- | 0.217 | 22.9 | 31.8 | 5914 | -- | -- |
| 98.06 | 0.463 | 10.4 | 1.85 | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
| 173.03 | 0.615 | 10.5 | -- | 0.49 | -- | -- | -- | 0.275 | 22.7 | -- | -- | -- | -- |
| 177.58 | 0.621 | 10.5 | -- | -- | -0.459 | -- | -- | 0.219 | -- | 30.98 | 5898 | -- | -- |
| 187.86 | 0.64 | 10.5 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 16 | 57.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 17 | 57.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 19 | 57.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 20 | 57.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 37 | 57.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 42 | 57.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 74 | 57.49 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 87 | 57.52 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 107 | 57.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 120 | 57.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 125 | 57.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 137 | 57.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 138 | 57.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 162 | 57.93 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 222 | 58.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 248 | 58.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 255 | 58.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 291 | 58.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 313 | 58.28 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 383 | 58.41 | temperature | 30 | 4320 | > th | dose dependent | sin | 3 | NA |
| 424 | 58.45 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 554 | 58.58 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 694 | 58.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 754 | 58.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 788 | 58.77 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 814 | 58.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 16 |
| 817 | 58.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 21 |
| 837 | 58.83 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |