Os10g0548300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os10g0548300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.94 | 0.274 | 10.4 | -0.118 | 0.881 | 1.02 | 1.01 | -2.05 | 0.4 | 5.89 | 20.1 | 4339 | -- | -- |
| 35.24 | 0.276 | 10.4 | 0.228 | 0.935 | 1.31 | 0.967 | -- | 0.4 | 5.87 | 13.39 | 7669 | -- | -- |
| 36.41 | 0.281 | 10.4 | -0.0948 | 0.885 | 1.02 | -- | -2.01 | 0.403 | 5.87 | 20.27 | 4357 | -- | -- |
| 37.25 | 0.284 | 10.4 | 0.257 | 0.912 | 1.28 | -- | -- | 0.407 | 5.82 | 8.889 | 7581 | -- | -- |
| 76.62 | 0.408 | 10.4 | -0.0607 | -- | 1.09 | -- | -1.86 | 0.417 | -- | 19.9 | 4210 | -- | -- |
| 61.8 | 0.369 | 10.3 | 0.903 | 0.912 | -- | 0.962 | -- | 0.762 | 5.72 | -- | -- | -- | -- |
| 64.07 | 0.375 | 10.3 | 0.909 | 0.917 | -- | -- | -- | 0.758 | 5.7 | -- | -- | -- | -- |
| 77.51 | 0.41 | 10.4 | 0.263 | -- | 1.33 | -- | -- | 0.429 | -- | 10.62 | 7090 | -- | -- |
| 38.43 | 0.289 | 10.4 | -- | 0.916 | 1.44 | -- | -- | 0.335 | 5.96 | 6.722 | 7992 | -- | -- |
| 107.73 | 0.485 | 10.3 | 0.938 | -- | -- | -- | -- | 0.78 | -- | -- | -- | -- | -- |
| 85.83 | 0.433 | 10.3 | -- | 0.932 | -- | -- | -- | 0.657 | 5.65 | -- | -- | -- | -- |
| 78.81 | 0.413 | 10.4 | -- | -- | 1.47 | -- | -- | 0.371 | -- | 5.967 | 7099 | -- | -- |
| 130.92 | 0.534 | 10.3 | -- | -- | -- | -- | -- | 0.676 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 32.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 4 | 32.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 8 | 32.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 11 | 32.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 41 | 32.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 58 | 32.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 65 | 32.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 86 | 32.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 142 | 33.13 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 220 | 33.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 16 |
| 345 | 33.47 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 431 | 33.55 | temperature | 25 | 4320 | > th | dose independent | sin | 1 | NA |
| 432 | 33.55 | temperature | 25 | 4320 | < th | dose independent | sin | 1 | NA |
| 547 | 33.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 592 | 33.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 838 | 33.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 21 |
| 896 | 33.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 22 |
| 902 | 33.95 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |