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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0547200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0213) R2 : 1.54e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00377 (0.0449) R2dN8 : 1.99e-05 R2N8 : 1.54e-05
σ : 0.402
deviance : 74.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.05 0.39 3.29 0.116 0.136 0.475 -0.451 0.65 0.0758 5.74 25.1 852 -- --
69.57 0.388 3.28 0.229 0.135 0.42 -0.478 -- 0.1 5.45 25.6 862 -- --
69.37 0.388 3.29 0.115 0.151 0.444 -- 0.602 0.0742 7.17 24.82 886 -- --
69.83 0.389 3.28 0.221 0.15 0.389 -- -- 0.0969 7.08 25.4 886 -- --
70.41 0.391 3.29 0.129 -- 0.481 -- 0.624 0.0873 -- 25.4 780 -- --
71.99 0.398 3.3 0.109 0.183 -- 0.0575 -- 0.0143 8.42 -- -- -- --
71.99 0.397 3.3 0.11 0.184 -- -- -- 0.014 8.23 -- -- -- --
70.57 0.391 3.28 0.232 -- 0.439 -- -- 0.11 -- 28.1 610 -- --
70.95 0.392 3.29 -- 0.156 0.287 -- -- 0.0537 7.43 25.4 854 -- --
73.87 0.402 3.3 0.111 -- -- -- -- 0.0161 -- -- -- -- --
72.31 0.398 3.3 -- 0.185 -- -- -- 0.00178 8.18 -- -- -- --
71.83 0.395 3.29 -- -- 0.352 -- -- 0.0673 -- 28.36 602 -- --
74.19 0.402 3.3 -- -- -- -- -- 0.00377 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.01 radiation 10.0 10 > th dose independent rect. 6 1
27 64.01 radiation 10.0 10 > th dose dependent rect. 6 1
57 66.49 atmosphere 1010.0 10 < th dose independent rect. 3 23
59 67.31 atmosphere 1005.0 10 > th dose dependent rect. 2 2
60 67.32 temperature 10.0 30 > th dose dependent rect. 3 23
61 67.37 atmosphere 1005.0 90 > th dose dependent rect. 2 1
64 67.46 temperature 15.0 10 > th dose independent rect. 3 23
65 67.49 atmosphere 995.0 30 > th dose independent rect. 3 23
67 67.51 wind 9.0 10 < th dose independent rect. 3 23
70 67.55 wind 3.0 30 < th dose dependent rect. 6 1
71 67.56 atmosphere 995.0 720 > th dose independent rect. 23 16
74 67.72 atmosphere 1005.0 30 > th dose dependent rect. 6 1
75 67.76 atmosphere 1010.0 30 < th dose dependent rect. 2 1
76 67.76 atmosphere 1005.0 10 > th dose dependent rect. 2 6
78 67.80 temperature 25.0 90 < th dose independent rect. 6 1
95 67.86 wind 1.0 30 < th dose dependent rect. 2 1
98 67.89 wind 9.0 720 < th dose independent rect. 3 8
101 67.91 wind 1.0 10 < th dose independent rect. 2 1
104 67.92 temperature 10.0 720 > th dose independent rect. 15 8
105 67.92 temperature 10.0 720 > th dose independent rect. 23 16
112 67.95 temperature 25.0 90 < th dose independent rect. 6 10
115 67.96 temperature 25.0 10 < th dose independent rect. 2 1
117 67.96 radiation 1.0 43200 < th dose dependent rect. 3 1
121 67.97 temperature 10.0 10 > th dose independent rect. 2 1
124 67.97 humidity 50.0 10 > th dose independent rect. 2 1
127 67.97 atmosphere 995.0 10 > th dose independent rect. 2 1
128 67.97 atmosphere 1010.0 10 < th dose independent rect. 2 1
130 67.97 radiation 1.0 10 < th dose independent rect. 2 1
135 67.97 precipitation 0.1 10 < th dose independent rect. 2 1
137 67.97 humidity 90.0 30 > th dose dependent rect. 2 1
139 67.97 radiation 1.0 10 < th dose dependent rect. 2 1
144 67.97 precipitation 0.1 10 < th dose dependent rect. 2 1
145 67.98 precipitation 0.1 720 < th dose independent rect. 15 8
147 67.98 temperature 30.0 10 < th dose dependent rect. 2 1
149 67.98 precipitation 0.1 720 < th dose dependent rect. 15 8
150 67.99 temperature 10.0 10 > th dose dependent rect. 2 1
152 67.99 humidity 50.0 10 > th dose dependent rect. 2 1
169 68.02 humidity 90.0 10 > th dose independent rect. 2 1
203 68.05 temperature 10.0 720 > th dose independent rect. 3 8
204 68.05 atmosphere 995.0 720 > th dose independent rect. 3 8
205 68.05 temperature 10.0 720 > th dose independent rect. 11 16
207 68.06 wind 1.0 10 < th dose independent rect. 6 1
210 68.07 wind 1.0 30 > th dose independent rect. 2 1
224 68.13 humidity 80.0 30 > th dose dependent rect. 6 1
231 68.19 atmosphere 1010.0 10 < th dose independent rect. 21 10
233 68.20 wind 5.0 14400 < th dose independent rect. 11 1
241 68.24 temperature 25.0 270 < th dose dependent rect. 4 12
248 68.27 temperature 25.0 720 > th dose independent rect. 3 12
252 68.28 temperature 25.0 270 < th dose dependent sin 3 NA
254 68.30 humidity 90.0 90 < th dose independent rect. 1 6
263 68.33 temperature 25.0 720 < th dose independent rect. 2 8
264 68.33 atmosphere 1010.0 10 < th dose independent rect. 3 12
265 68.34 atmosphere 1010.0 10 < th dose independent rect. 8 23
268 68.34 humidity 80.0 14400 < th dose dependent rect. 3 6
269 68.34 temperature 30.0 10 < th dose dependent rect. 6 10
273 68.35 atmosphere 1010.0 10 < th dose independent rect. 10 21
285 68.40 temperature 25.0 720 > th dose independent rect. 22 17
286 68.40 precipitation 0.1 30 < th dose independent rect. 3 23
287 68.40 precipitation 0.1 30 < th dose dependent rect. 3 23
288 68.41 humidity 50.0 720 > th dose independent rect. 3 8
292 68.42 atmosphere 1010.0 10 < th dose independent sin 7 NA
297 68.43 temperature 25.0 720 < th dose independent sin 5 NA
298 68.43 humidity 70.0 14400 > th dose independent rect. 8 1
300 68.43 temperature 20.0 720 > th dose dependent rect. 3 1
307 68.45 temperature 30.0 10 < th dose dependent rect. 6 8
311 68.46 temperature 25.0 720 < th dose independent rect. 22 16
314 68.47 wind 5.0 14400 > th dose independent rect. 11 1
315 68.47 atmosphere 1015.0 720 < th dose independent rect. 3 8
350 68.54 temperature 25.0 720 > th dose dependent rect. 3 5
366 68.57 humidity 70.0 14400 < th dose independent rect. 8 1
374 68.58 temperature 25.0 270 < th dose independent sin 2 NA
375 68.58 wind 9.0 1440 < th dose independent rect. 3 1
376 68.58 temperature 10.0 1440 > th dose independent rect. 3 1
379 68.58 temperature 30.0 1440 < th dose independent rect. 3 1
383 68.58 humidity 50.0 1440 > th dose independent rect. 3 1
392 68.58 atmosphere 995.0 1440 > th dose independent rect. 3 1
393 68.58 radiation 1.0 1440 < th dose independent rect. 3 1
414 68.58 atmosphere 1010.0 10 < th dose independent rect. 3 14
415 68.58 temperature 10.0 1440 > th dose independent rect. 4 23
437 68.60 temperature 25.0 720 > th dose independent sin 4 NA
443 68.60 temperature 30.0 10 < th dose dependent rect. 6 6
446 68.61 temperature 25.0 720 > th dose independent rect. 3 6
456 68.62 precipitation 0.1 720 < th dose independent rect. 11 16
458 68.62 precipitation 0.1 720 < th dose dependent rect. 11 16
473 68.65 humidity 70.0 14400 > th dose independent rect. 4 5
475 68.65 humidity 70.0 14400 > th dose independent rect. 1 8
495 68.66 temperature 30.0 30 < th dose dependent rect. 6 1
499 68.67 radiation 40.0 720 < th dose independent rect. 15 8
507 68.68 precipitation 0.1 14400 > th dose independent rect. 1 8
511 68.68 wind 1.0 14400 < th dose dependent rect. 6 1
513 68.68 precipitation 0.1 14400 > th dose dependent rect. 1 8
520 68.69 wind 9.0 720 < th dose independent rect. 23 16
523 68.69 temperature 30.0 270 < th dose dependent rect. 22 16
533 68.71 atmosphere 1010.0 10 < th dose independent rect. 23 8
538 68.71 temperature 30.0 270 < th dose dependent rect. 22 21
540 68.72 temperature 20.0 4320 > th dose independent rect. 22 1
551 68.72 temperature 10.0 30 > th dose dependent rect. 8 22
553 68.73 atmosphere 1010.0 10 < th dose independent rect. 3 10
558 68.74 precipitation 0.1 14400 < th dose independent rect. 1 8
565 68.74 precipitation 0.1 14400 < th dose dependent rect. 1 8
582 68.76 atmosphere 1010.0 10 < th dose independent rect. 10 23
594 68.77 atmosphere 1005.0 10 > th dose dependent rect. 18 14
608 68.79 radiation 1.0 30 > th dose independent rect. 8 22
614 68.80 temperature 20.0 4320 < th dose independent rect. 22 1
615 68.80 humidity 90.0 90 < th dose independent rect. 2 1
634 68.81 precipitation 0.1 720 < th dose independent rect. 23 16
637 68.81 wind 3.0 30 < th dose dependent rect. 2 6
638 68.81 temperature 25.0 720 > th dose dependent rect. 24 9
642 68.81 precipitation 0.1 720 < th dose dependent rect. 23 16
762 68.88 temperature 30.0 10 < th dose dependent rect. 6 13
783 68.89 wind 9.0 30 < th dose dependent rect. 3 23
784 68.90 wind 1.0 14400 < th dose independent rect. 6 1
813 68.92 wind 9.0 720 < th dose independent rect. 15 8
830 68.93 temperature 25.0 1440 > th dose independent rect. 11 1
846 68.94 humidity 80.0 30 > th dose independent rect. 2 8
864 68.95 temperature 25.0 1440 < th dose independent rect. 11 1
871 68.95 humidity 50.0 30 > th dose independent rect. 3 23
878 68.96 wind 9.0 14400 > th dose independent rect. 16 1
910 68.97 wind 3.0 14400 > th dose dependent rect. 11 1
924 68.98 wind 5.0 14400 < th dose independent rect. 9 6
940 68.98 temperature 15.0 30 > th dose dependent rect. 10 15
952 68.99 atmosphere 1010.0 10 < th dose independent rect. 21 23
959 68.99 temperature 10.0 30 > th dose dependent rect. 8 18
963 69.00 temperature 25.0 10 > th dose independent rect. 8 10
983 69.00 temperature 15.0 30 > th dose dependent rect. 10 20
995 69.01 temperature 30.0 10 < th dose dependent sin 2 NA