Os10g0546600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast carotenoid epsilon-ring hydroxylase.
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Os10g0546600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast carotenoid epsilon-ring hydroxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.24 | 0.587 | 7.28 | -1.33 | 0.932 | -1.72 | 0.193 | -3.57 | -1.9 | 20 | 12.93 | 6576 | 8.05 | 0.713 |
| 169.44 | 0.606 | 7.31 | -1.31 | 0.922 | -1.49 | 0.197 | -- | -1.94 | 19.9 | 14.35 | 6570 | 8.02 | 0.677 |
| 156.19 | 0.582 | 7.28 | -1.33 | 0.935 | -1.71 | -- | -3.51 | -1.9 | 19.9 | 13.44 | 6574 | 8.04 | 0.683 |
| 169.54 | 0.606 | 7.31 | -1.33 | 0.928 | -1.51 | -- | -- | -1.95 | 20 | 14.48 | 6570 | 8.02 | 0.676 |
| 201.73 | 0.662 | 7.28 | -1.15 | -- | -1.64 | -- | -3.48 | -1.91 | -- | 14.32 | 7657 | 8.02 | 0.783 |
| 215.93 | 0.689 | 7.23 | -0.994 | 0.915 | -- | 0.223 | -- | -1.54 | 20.6 | -- | -- | -- | -- |
| 216.1 | 0.688 | 7.23 | -1 | 0.915 | -- | -- | -- | -1.54 | 20.6 | -- | -- | -- | -- |
| 201.24 | 0.661 | 7.31 | -1.23 | -- | -1.62 | -- | -- | -2 | -- | 12.94 | 6230 | 8.15 | 0.0167 |
| 200.77 | 0.66 | 7.25 | -- | 0.934 | -1.45 | -- | -- | -1.69 | 19.8 | 30 | 7919 | 7.7 | 0.555 |
| 263.27 | 0.758 | 7.21 | -1 | -- | -- | -- | -- | -1.55 | -- | -- | -- | -- | -- |
| 242.53 | 0.728 | 7.21 | -- | 0.918 | -- | -- | -- | -1.43 | 20.5 | -- | -- | -- | -- |
| 231.71 | 0.709 | 7.22 | -- | -- | -1.58 | -- | -- | -1.61 | -- | 47.06 | 7570 | 7.8 | 0.283 |
| 289.86 | 0.795 | 7.18 | -- | -- | -- | -- | -- | -1.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 2 | 165.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 3 | 165.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 4 | 165.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 10 | 167.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 11 | 167.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 12 | 167.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 13 | 167.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 14 | 167.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 15 | 167.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 31 | 169.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 35 | 169.37 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 37 | 169.66 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 41 | 169.77 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 49 | 170.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 54 | 170.34 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 62 | 170.53 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 65 | 170.58 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 68 | 170.67 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 69 | 170.68 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 70 | 170.69 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 71 | 170.69 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 100 | 171.45 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 170 | 172.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 176 | 172.80 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 178 | 172.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 180 | 172.83 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 192 | 172.95 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 195 | 172.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 204 | 173.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 206 | 173.06 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 213 | 173.12 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 219 | 173.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 239 | 173.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 240 | 173.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 243 | 173.37 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 249 | 173.40 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 252 | 173.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 254 | 173.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 261 | 173.53 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 275 | 173.66 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 292 | 173.82 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 312 | 173.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 320 | 174.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 333 | 174.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 344 | 174.15 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 386 | 174.37 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 389 | 174.38 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 392 | 174.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 395 | 174.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 400 | 174.43 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 401 | 174.44 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 416 | 174.51 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 422 | 174.56 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 468 | 174.75 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 484 | 174.83 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 509 | 174.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 529 | 175.01 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 536 | 175.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 551 | 175.04 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 568 | 175.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 572 | 175.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 593 | 175.14 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 634 | 175.26 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 647 | 175.29 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 665 | 175.34 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 671 | 175.37 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 707 | 175.47 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 19 |
| 712 | 175.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 715 | 175.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 719 | 175.51 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 729 | 175.54 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 787 | 175.68 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 797 | 175.70 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 800 | 175.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 802 | 175.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 890 | 175.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 891 | 175.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 929 | 176.00 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 947 | 176.02 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 969 | 176.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |